Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AKR7A2_chr1_19298965_19317144	0/0	a0016	359	1	0	0	0	0	1	copy fasta	AKR7A2	chr1	19298965	19317144
AKR7A3_chr1_19277573_19293770	0/0	a0001	331	199	21	37	118	6	17	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	a0002	331	116	14	30	42	10	20	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	1/1	a0003	331	55	23	6	19	0	5	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	a0004	331	21	2	1	15	0	3	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	a0005	331	10	8	2	0	0	0	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	a0006	331	9	9	0	0	0	0	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	a0007	331	5	5	0	0	0	0	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	a0008	331	3	3	0	0	0	0	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	a0009	331	3	1	2	0	0	0	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	a0010	331	3	1	2	0	0	0	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	a0011	331	3	3	0	0	0	0	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	a0012	331	1	1	0	0	0	0	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	a0013	331	1	1	0	0	0	0	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	a0014	331	1	0	0	0	0	1	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	a0015	331	1	1	0	0	0	0	copy fasta	AKR7A3	chr1	19277573	19293770
AKR7A3_chr1_19277573_19293770	0/0	a0016	331	1	1	0	0	0	0	copy fasta	AKR7A3	chr1	19277573	19293770
AKT1S1_chr19_49864039_49882355	1/1	a0001	256	419	92	72	191	14	48	copy fasta	AKT1S1	chr19	49864039	49882355
AKT1S1_chr19_49864039_49882355	0/0	a0002	256	1	0	0	1	0	0	copy fasta	AKT1S1	chr19	49864039	49882355
AKT1_chr14_104764349_104800748	1/1	a0001	480	386	98	82	150	16	38	copy fasta	AKT1	chr14	104764349	104800748
AKT2_chr19_40225317_40290345	1/1	a0001	481	357	98	62	157	14	24	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	a0002	481	2	0	0	0	2	0	copy fasta	AKT2	chr19	40225317	40290345
AKT2_chr19_40225317_40290345	0/0	a0003	481	1	0	0	1	0	0	copy fasta	AKT2	chr19	40225317	40290345
AKT3_chr1_243494724_243855243	0/1	a0001	479	301	76	62	112	10	40	copy fasta	AKT3	chr1	243494724	243855243
AKTIP_chr16_53486040_53508209	1/1	a0001	292	386	92	70	158	14	50	copy fasta	AKTIP	chr16	53486040	53508209
ALAD_chr9_113381312_113406284	1/1	a0001	330	419	100	82	183	18	34	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	a0002	330	25	0	2	15	0	8	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	a0003	330	1	0	0	1	0	0	copy fasta	ALAD	chr9	113381312	113406284
ALAD_chr9_113381312_113406284	0/0	a0004	330	1	0	0	1	0	0	copy fasta	ALAD	chr9	113381312	113406284
ALAS1_chr3_52193160_52219327	1/1	a0001	640	344	87	72	136	16	31	copy fasta	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	a0002	640	3	0	0	2	0	1	copy fasta	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	a0003	640	1	1	0	0	0	0	copy fasta	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	a0004	640	1	0	0	0	0	1	copy fasta	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	a0005	640	1	0	0	1	0	0	copy fasta	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	a0006	640	1	0	0	1	0	0	copy fasta	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	a0007	640	1	1	0	0	0	0	copy fasta	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	a0008	640	1	0	0	0	0	1	copy fasta	ALAS1	chr3	52193160	52219327
ALAS1_chr3_52193160_52219327	0/0	a0009	640	1	1	0	0	0	0	copy fasta	ALAS1	chr3	52193160	52219327
ALAS2_chrX_55004055_55035977	1/1	a0001	587	282	75	53	121	5	26	copy fasta	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	a0002	587	1	0	1	0	0	0	copy fasta	ALAS2	chrX	55004055	55035977
ALAS2_chrX_55004055_55035977	0/0	a0003	587	1	1	0	0	0	0	copy fasta	ALAS2	chrX	55004055	55035977
ALB_chr4_73399287_73426482	1/1	a0001	609	384	90	70	172	14	36	copy fasta	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	a0002	609	3	0	1	0	0	2	copy fasta	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	a0003	609	2	0	0	0	2	0	copy fasta	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	a0004	609	1	0	0	1	0	0	copy fasta	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	a0005	609	1	0	0	1	0	0	copy fasta	ALB	chr4	73399287	73426482
ALB_chr4_73399287_73426482	0/0	a0006	609	1	0	1	0	0	0	copy fasta	ALB	chr4	73399287	73426482
ALCAM_chr3_105361909_105581900	1/0	a0001	583	324	85	51	146	12	29	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	a0002	583	24	2	5	11	3	3	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/1	a0003	583	20	0	6	6	1	6	copy fasta	ALCAM	chr3	105361909	105581900