JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GTF2F1_chr19_6374572_6398164	0/0	a0002	517	2	0	0	2	0	0	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F1_chr19_6374572_6398164	0/0	a0003	517	1	1	0	0	0	0	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F1_chr19_6374572_6398164	0/0	a0004	517	1	1	0	0	0	0	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F1_chr19_6374572_6398164	0/0	a0005	517	1	0	0	1	0	0	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F1_chr19_6374572_6398164	0/0	a0006	517	1	1	0	0	0	0	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F1_chr19_6374572_6398164	0/0	a0007	517	1	0	0	1	0	0	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F1_chr19_6374572_6398164	0/0	a0008	517	1	0	0	0	1	0	copy fasta	GTF2F1	chr19	6374572	6398164
GTF2F2_chr13_45115510_45289893	1/1	a0001	249	210	80	40	66	4	18	copy fasta	GTF2F2	chr13	45115510	45289893
GTF2H1_chr11_18317567_18372045	1/1	a0001	548	365	98	66	154	16	29	copy fasta	GTF2H1	chr11	18317567	18372045
GTF2H1_chr11_18317567_18372045	0/0	a0002	548	3	0	0	3	0	0	copy fasta	GTF2H1	chr11	18317567	18372045
GTF2H1_chr11_18317567_18372045	0/0	a0003	548	1	0	0	1	0	0	copy fasta	GTF2H1	chr11	18317567	18372045
GTF2H1_chr11_18317567_18372045	0/0	a0004	548	1	0	0	0	0	1	copy fasta	GTF2H1	chr11	18317567	18372045
GTF2H2C_chr5_69555191_69600221	0/1	a0001	395	152	45	35	44	6	21	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	a0002	395	13	4	5	3	0	1	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	a0003	395	1	0	0	1	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2C_chr5_69555191_69600221	0/0	a0004	395	1	1	0	0	0	0	copy fasta	GTF2H2C	chr5	69555191	69600221
GTF2H2_chr5_71030347_71072676	0/1	a0001	395	72	25	20	14	2	10	copy fasta	GTF2H2	chr5	71030347	71072676
GTF2H2_chr5_71030347_71072676	0/0	a0002	395	3	1	2	0	0	0	copy fasta	GTF2H2	chr5	71030347	71072676
GTF2H2_chr5_71030347_71072676	0/0	a0003	395	2	1	1	0	0	0	copy fasta	GTF2H2	chr5	71030347	71072676
GTF2H2_chr5_71030347_71072676	0/0	a0004	53	1	1	0	0	0	0	copy fasta	GTF2H2	chr5	71030347	71072676
GTF2H2_chr5_71030347_71072676	0/0	a0005	395	1	0	1	0	0	0	copy fasta	GTF2H2	chr5	71030347	71072676
GTF2H3_chr12_123628829_123667604	1/1	a0001	308	271	92	51	70	18	38	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H3_chr12_123628829_123667604	0/0	a0002	2	1	0	1	0	0	0	copy fasta	GTF2H3	chr12	123628829	123667604
GTF2H4_chr6_30903207_30919106	0/1	a0001	462	406	92	75	177	16	45	copy fasta	GTF2H4	chr6	30903207	30919106
GTF2H4_chr6_30903207_30919106	0/0	a0002	462	2	0	2	0	0	0	copy fasta	GTF2H4	chr6	30903207	30919106
GTF2H4_chr6_30903207_30919106	0/0	a0003	462	1	0	0	0	0	1	copy fasta	GTF2H4	chr6	30903207	30919106
GTF2H4_chr6_30903207_30919106	0/0	a0004	462	1	0	0	1	0	0	copy fasta	GTF2H4	chr6	30903207	30919106
GTF2H4_chr6_30903207_30919106	0/0	a0005	462	1	0	1	0	0	0	copy fasta	GTF2H4	chr6	30903207	30919106
GTF2H5_chr6_158163350_158204344	1/1	a0001	71	384	90	70	160	14	48	copy fasta	GTF2H5	chr6	158163350	158204344
GTF2IRD1_chr7_74448906_74607605	1/1	a0001	944	129	22	42	38	6	19	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	a0002	944	126	41	15	56	4	10	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	a0003	944	2	2	0	0	0	0	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	a0004	117	1	0	0	1	0	0	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	a0005	944	1	0	0	1	0	0	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	a0006	944	1	0	1	0	0	0	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	a0007	944	1	1	0	0	0	0	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD1_chr7_74448906_74607605	0/0	a0008	944	1	0	0	0	0	1	copy fasta	GTF2IRD1	chr7	74448906	74607605
GTF2IRD2B_chr7_75087590_75154817	1/1	a0001	949	139	36	33	38	10	20	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2B_chr7_75087590_75154817	0/0	a0002	949	16	15	1	0	0	0	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2B_chr7_75087590_75154817	0/0	a0003	949	8	0	0	8	0	0	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2B_chr7_75087590_75154817	0/0	a0004	949	2	2	0	0	0	0	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2B_chr7_75087590_75154817	0/0	a0005	949	1	1	0	0	0	0	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2B_chr7_75087590_75154817	0/0	a0006	949	1	0	0	1	0	0	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2B_chr7_75087590_75154817	0/0	a0007	949	1	0	0	1	0	0	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2B_chr7_75087590_75154817	0/0	a0008	949	1	1	0	0	0	0	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2B_chr7_75087590_75154817	0/0	a0009	949	1	1	0	0	0	0	copy fasta	GTF2IRD2B	chr7	75087590	75154817
GTF2IRD2_chr7_74791151_74856605	0/0	a0001	949	3	1	0	0	0	2	copy fasta	GTF2IRD2	chr7	74791151	74856605
GTF2IRD2_chr7_74791151_74856605	0/1	a0002	949	2	1	0	0	0	0	copy fasta	GTF2IRD2	chr7	74791151	74856605
GTF2IRD2_chr7_74791151_74856605	0/0	a0003	949	1	0	1	0	0	0	copy fasta	GTF2IRD2	chr7	74791151	74856605
GTF2IRD2_chr7_74791151_74856605	0/0	a0004	949	1	0	1	0	0	0	copy fasta	GTF2IRD2	chr7	74791151	74856605