JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GTPBP2_chr6_43615494_43634264	0/0	a0002	602	1	0	0	1	0	0	copy fasta	GTPBP2	chr6	43615494	43634264
GTPBP2_chr6_43615494_43634264	0/0	a0003	602	1	0	1	0	0	0	copy fasta	GTPBP2	chr6	43615494	43634264
GTPBP2_chr6_43615494_43634264	0/0	a0004	602	1	1	0	0	0	0	copy fasta	GTPBP2	chr6	43615494	43634264
GTPBP3_chr19_17332553_17347731	0/0	a0000	0	49	11	9	22	1	6	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	a0001	492	183	77	28	41	12	25	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	1/1	a0002	492	110	8	30	52	5	13	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	a0003	492	58	0	6	50	0	2	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	a0004	492	1	0	1	0	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	a0005	492	1	0	0	1	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	a0006	492	1	0	0	1	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	a0007	492	1	1	0	0	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	a0008	492	1	1	0	0	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	a0009	492	1	0	0	1	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	a0010	492	1	0	0	1	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP3_chr19_17332553_17347731	0/0	a0011	492	1	0	0	1	0	0	copy fasta	GTPBP3	chr19	17332553	17347731
GTPBP4_chr10_983434_1024932	1/1	a0001	634	330	81	69	129	15	34	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	a0002	634	28	2	5	19	0	2	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	a0003	634	2	0	0	0	0	2	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	a0004	634	2	0	0	0	0	2	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	a0005	634	2	2	0	0	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	a0006	634	2	2	0	0	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	a0007	634	1	1	0	0	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	a0008	634	1	0	0	1	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	a0009	634	1	0	0	0	1	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP4_chr10_983434_1024932	0/0	a0010	634	1	0	0	1	0	0	copy fasta	GTPBP4	chr10	983434	1024932
GTPBP6_chrX_299759_323796	1/0	a0001	516	59	8	11	31	1	7	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/1	a0002	516	37	4	11	18	1	2	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	a0003	516	15	0	4	10	1	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	a0004	516	6	0	3	1	1	1	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	a0005	516	4	0	0	1	2	1	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	a0006	516	3	3	0	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	a0007	516	3	0	0	3	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	a0008	516	3	2	1	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	a0009	516	2	0	0	2	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	a0010	516	2	2	0	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	a0011	516	2	0	0	2	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	a0012	516	2	1	0	1	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	a0013	102	1	0	0	1	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	a0014	516	1	1	0	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	a0015	516	1	1	0	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	a0016	516	1	0	1	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	a0017	516	1	1	0	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	a0018	516	1	1	0	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	a0019	516	1	0	0	0	0	1	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	a0020	516	1	0	1	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	a0021	516	1	1	0	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	a0022	269	1	0	0	1	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	a0023	516	1	1	0	0	0	0	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	a0024	516	1	0	0	0	0	1	copy fasta	GTPBP6	chrX	299759	323796
GTPBP6_chrX_299759_323796	0/0	a0025	103	1	0	1	0	0	0	copy fasta	GTPBP6	chrX	299759	323796