JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GYG1_chr3_148986540_149036775	1/1	a0001	350	409	95	64	184	18	46	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	a0002	350	3	3	0	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG1_chr3_148986540_149036775	0/0	a0003	350	2	0	2	0	0	0	copy fasta	GYG1	chr3	148986540	149036775
GYG2_chrX_2823930_2887818	0/1	a0001	470	167	17	28	91	5	25	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	1/0	a0002	470	127	56	19	40	5	6	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	a0003	470	4	4	0	0	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	a0004	470	3	2	1	0	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	a0005	470	3	0	2	0	1	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	a0006	470	3	0	2	1	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	a0007	470	1	0	1	0	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	a0008	404	1	0	0	1	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	a0009	470	1	1	0	0	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	a0010	470	1	0	0	0	0	1	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	a0011	300	1	0	1	0	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	a0012	470	1	0	0	0	0	1	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	a0013	470	1	0	0	0	0	1	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	a0014	27	1	0	0	1	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYG2_chrX_2823930_2887818	0/0	a0015	14	1	0	0	1	0	0	copy fasta	GYG2	chrX	2823930	2887818
GYPA_chr4_144104303_144145718	0/0	a0001	150	223	44	43	96	10	30	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	0/1	a0002	150	157	17	26	87	8	18	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	1/0	a0003	150	49	35	7	6	0	0	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	0/0	a0004	150	2	2	0	0	0	0	copy fasta	GYPA	chr4	144104303	144145718
GYPA_chr4_144104303_144145718	0/0	a0005	150	1	0	0	1	0	0	copy fasta	GYPA	chr4	144104303	144145718
GYPB_chr4_143991104_144024380	1/1	a0001	91	267	65	40	136	6	18	copy fasta	GYPB	chr4	143991104	144024380
GYPB_chr4_143991104_144024380	0/0	a0002	91	76	11	30	13	7	15	copy fasta	GYPB	chr4	143991104	144024380
GYPB_chr4_143991104_144024380	0/0	a0003	91	75	3	8	50	3	11	copy fasta	GYPB	chr4	143991104	144024380
GYPB_chr4_143991104_144024380	0/0	a0004	91	5	0	0	5	0	0	copy fasta	GYPB	chr4	143991104	144024380
GYPB_chr4_143991104_144024380	0/0	a0005	91	3	2	0	1	0	0	copy fasta	GYPB	chr4	143991104	144024380
GYPB_chr4_143991104_144024380	0/0	a0006	91	3	1	2	0	0	0	copy fasta	GYPB	chr4	143991104	144024380
GYPB_chr4_143991104_144024380	0/0	a0007	91	2	2	0	0	0	0	copy fasta	GYPB	chr4	143991104	144024380
GYPB_chr4_143991104_144024380	0/0	a0008	91	2	0	2	0	0	0	copy fasta	GYPB	chr4	143991104	144024380
GYPB_chr4_143991104_144024380	0/0	a0009	91	1	0	0	1	0	0	copy fasta	GYPB	chr4	143991104	144024380
GYPC_chr2_126651158_126701667	1/1	a0001	128	400	83	73	178	17	47	copy fasta	GYPC	chr2	126651158	126701667
GYPC_chr2_126651158_126701667	0/0	a0002	128	4	0	1	0	1	2	copy fasta	GYPC	chr2	126651158	126701667
GYPC_chr2_126651158_126701667	0/0	a0003	128	4	4	0	0	0	0	copy fasta	GYPC	chr2	126651158	126701667
GYPC_chr2_126651158_126701667	0/0	a0004	128	3	3	0	0	0	0	copy fasta	GYPC	chr2	126651158	126701667
GYPC_chr2_126651158_126701667	0/0	a0005	100	2	0	2	0	0	0	copy fasta	GYPC	chr2	126651158	126701667
GYPC_chr2_126651158_126701667	0/0	a0006	109	2	0	2	0	0	0	copy fasta	GYPC	chr2	126651158	126701667
GYPC_chr2_126651158_126701667	0/0	a0007	128	1	0	0	0	0	1	copy fasta	GYPC	chr2	126651158	126701667
GYPE_chr4_143865864_143910559	0/1	a0001	78	333	89	51	154	10	28	copy fasta	GYPE	chr4	143865864	143910559
GYPE_chr4_143865864_143910559	1/0	a0002	78	61	1	23	16	8	12	copy fasta	GYPE	chr4	143865864	143910559
GYPE_chr4_143865864_143910559	0/0	a0003	78	2	2	0	0	0	0	copy fasta	GYPE	chr4	143865864	143910559
GYPE_chr4_143865864_143910559	0/0	a0004	78	1	1	0	0	0	0	copy fasta	GYPE	chr4	143865864	143910559
GYPE_chr4_143865864_143910559	0/0	a0005	78	1	1	0	0	0	0	copy fasta	GYPE	chr4	143865864	143910559
GYS1_chr19_48963130_48998309	1/1	a0001	737	365	92	73	139	14	45	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	a0002	737	18	2	0	13	0	3	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	a0003	737	1	0	0	1	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	a0004	737	1	0	0	0	0	1	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	a0005	737	1	0	0	1	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	a0006	737	1	0	0	1	0	0	copy fasta	GYS1	chr19	48963130	48998309