Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ALCAM_chr3_105361909_105581900	0/0	a0004	583	7	0	4	0	2	1	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	a0005	583	1	1	0	0	0	0	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	a0006	583	1	0	0	0	0	1	copy fasta	ALCAM	chr3	105361909	105581900
ALCAM_chr3_105361909_105581900	0/0	a0007	583	1	0	0	1	0	0	copy fasta	ALCAM	chr3	105361909	105581900
ALDH16A1_chr19_49448225_49476050	1/0	a0001	802	168	40	35	69	3	20	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/1	a0002	802	144	37	36	39	8	23	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	a0003	802	8	7	1	0	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	a0004	802	5	5	0	0	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	a0005	802	3	0	2	1	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	a0006	802	3	2	1	0	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	a0007	802	1	1	0	0	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	a0008	802	1	1	0	0	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	a0009	802	1	0	1	0	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	a0010	802	1	0	0	0	0	1	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	a0011	802	1	0	1	0	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	a0012	802	1	0	0	1	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	a0013	802	1	0	1	0	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	a0014	802	1	0	0	1	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	a0015	802	1	0	0	0	1	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	a0016	802	1	0	0	1	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH16A1_chr19_49448225_49476050	0/0	a0017	802	1	1	0	0	0	0	copy fasta	ALDH16A1	chr19	49448225	49476050
ALDH18A1_chr10_95600941_95661711	1/0	a0001	795	343	79	63	153	14	33	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/1	a0002	795	17	1	10	1	2	2	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	a0003	795	7	0	2	4	0	1	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	a0004	795	1	0	0	1	0	0	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	a0005	440	1	0	0	1	0	0	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	a0006	795	1	0	0	1	0	0	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	a0007	795	1	0	0	1	0	0	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH18A1_chr10_95600941_95661711	0/0	a0008	795	1	0	1	0	0	0	copy fasta	ALDH18A1	chr10	95600941	95661711
ALDH1A1_chr9_72895671_72958053	1/1	a0001	501	300	82	54	116	12	34	copy fasta	ALDH1A1	chr9	72895671	72958053
ALDH1A1_chr9_72895671_72958053	0/0	a0002	501	4	0	0	4	0	0	copy fasta	ALDH1A1	chr9	72895671	72958053
ALDH1A1_chr9_72895671_72958053	0/0	a0003	501	2	2	0	0	0	0	copy fasta	ALDH1A1	chr9	72895671	72958053
ALDH1A2_chr15_57948429_58070711	1/0	a0001	518	167	58	27	57	6	18	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A2_chr15_57948429_58070711	0/1	a0002	518	159	38	31	69	4	16	copy fasta	ALDH1A2	chr15	57948429	58070711
ALDH1A3_chr15_100874831_100921626	1/1	a0001	512	349	63	69	168	16	31	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	a0002	512	64	37	5	21	0	1	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1A3_chr15_100874831_100921626	0/0	a0003	512	1	0	0	1	0	0	copy fasta	ALDH1A3	chr15	100874831	100921626
ALDH1B1_chr9_38387702_38403661	0/1	a0001	517	170	27	30	75	11	26	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	a0002	517	148	50	24	70	0	4	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	a0003	517	130	11	18	75	7	19	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	1/0	a0004	517	14	8	5	0	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	a0005	517	12	0	8	4	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	a0006	517	3	0	0	3	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	a0007	517	1	0	0	1	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	a0008	517	1	0	0	1	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	a0009	517	1	0	1	0	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	a0010	517	1	0	0	1	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	a0011	517	1	1	0	0	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	a0012	517	1	1	0	0	0	0	copy fasta	ALDH1B1	chr9	38387702	38403661
ALDH1B1_chr9_38387702_38403661	0/0	a0013	517	1	0	0	0	0	1	copy fasta	ALDH1B1	chr9	38387702	38403661