JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GYS1_chr19_48963130_48998309	0/0	a0007	737	1	0	0	0	0	1	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	a0008	737	1	0	0	1	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS1_chr19_48963130_48998309	0/0	a0009	737	1	0	1	0	0	0	copy fasta	GYS1	chr19	48963130	48998309
GYS2_chr12_21531107_21609847	0/0	a0001	703	199	42	35	84	14	24	copy fasta	GYS2	chr12	21531107	21609847
GYS2_chr12_21531107_21609847	1/1	a0002	703	92	30	16	31	2	11	copy fasta	GYS2	chr12	21531107	21609847
GYS2_chr12_21531107_21609847	0/0	a0003	703	10	10	0	0	0	0	copy fasta	GYS2	chr12	21531107	21609847
GYS2_chr12_21531107_21609847	0/0	a0004	703	5	5	0	0	0	0	copy fasta	GYS2	chr12	21531107	21609847
GYS2_chr12_21531107_21609847	0/0	a0005	703	3	0	2	0	0	1	copy fasta	GYS2	chr12	21531107	21609847
GYS2_chr12_21531107_21609847	0/0	a0006	703	1	0	0	1	0	0	copy fasta	GYS2	chr12	21531107	21609847
GYS2_chr12_21531107_21609847	0/0	a0007	703	1	0	1	0	0	0	copy fasta	GYS2	chr12	21531107	21609847
GYS2_chr12_21531107_21609847	0/0	a0008	703	1	1	0	0	0	0	copy fasta	GYS2	chr12	21531107	21609847
GZF1_chr20_23357182_23378062	0/1	a0001	711	299	68	42	155	10	23	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	1/0	a0002	711	94	11	26	31	6	19	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/0	a0003	711	21	1	0	20	0	0	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/0	a0004	711	6	4	2	0	0	0	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/0	a0005	711	5	5	0	0	0	0	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/0	a0006	704	1	1	0	0	0	0	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/0	a0007	469	1	0	0	1	0	0	copy fasta	GZF1	chr20	23357182	23378062
GZF1_chr20_23357182_23378062	0/0	a0008	711	1	0	0	1	0	0	copy fasta	GZF1	chr20	23357182	23378062
GZMA_chr5_55097646_55115252	0/1	a0001	262	353	78	57	167	11	39	copy fasta	GZMA	chr5	55097646	55115252
GZMA_chr5_55097646_55115252	0/0	a0002	262	16	0	0	15	0	1	copy fasta	GZMA	chr5	55097646	55115252
GZMA_chr5_55097646_55115252	1/0	a0003	262	9	5	2	0	1	0	copy fasta	GZMA	chr5	55097646	55115252
GZMA_chr5_55097646_55115252	0/0	a0004	262	8	6	0	0	2	0	copy fasta	GZMA	chr5	55097646	55115252
GZMA_chr5_55097646_55115252	0/0	a0005	262	2	0	0	2	0	0	copy fasta	GZMA	chr5	55097646	55115252
GZMA_chr5_55097646_55115252	0/0	a0006	262	1	1	0	0	0	0	copy fasta	GZMA	chr5	55097646	55115252
GZMA_chr5_55097646_55115252	0/0	a0007	262	1	0	1	0	0	0	copy fasta	GZMA	chr5	55097646	55115252
GZMB_chr14_24625954_24639190	0/0	a0001	247	309	49	50	164	10	36	copy fasta	GZMB	chr14	24625954	24639190
GZMB_chr14_24625954_24639190	0/1	a0002	247	102	24	17	42	8	10	copy fasta	GZMB	chr14	24625954	24639190
GZMB_chr14_24625954_24639190	0/0	a0003	247	12	12	0	0	0	0	copy fasta	GZMB	chr14	24625954	24639190
GZMB_chr14_24625954_24639190	1/0	a0004	247	11	10	0	0	0	0	copy fasta	GZMB	chr14	24625954	24639190
GZMB_chr14_24625954_24639190	0/0	a0005	247	7	2	0	5	0	0	copy fasta	GZMB	chr14	24625954	24639190
GZMB_chr14_24625954_24639190	0/0	a0006	247	3	0	0	3	0	0	copy fasta	GZMB	chr14	24625954	24639190
GZMB_chr14_24625954_24639190	0/0	a0007	247	1	0	0	0	0	1	copy fasta	GZMB	chr14	24625954	24639190
GZMB_chr14_24625954_24639190	0/0	a0008	247	1	0	0	1	0	0	copy fasta	GZMB	chr14	24625954	24639190
GZMB_chr14_24625954_24639190	0/0	a0009	247	1	0	1	0	0	0	copy fasta	GZMB	chr14	24625954	24639190
GZMB_chr14_24625954_24639190	0/0	a0010	247	1	1	0	0	0	0	copy fasta	GZMB	chr14	24625954	24639190
GZMB_chr14_24625954_24639190	0/0	a0011	247	1	0	0	1	0	0	copy fasta	GZMB	chr14	24625954	24639190
GZMB_chr14_24625954_24639190	0/0	a0012	247	1	0	0	0	0	1	copy fasta	GZMB	chr14	24625954	24639190
GZMH_chr14_24601480_24614685	0/0	a0000	0	8	8	0	0	0	0	copy fasta	GZMH	chr14	24601480	24614685
GZMH_chr14_24601480_24614685	1/1	a0001	246	381	79	75	167	15	43	copy fasta	GZMH	chr14	24601480	24614685
GZMH_chr14_24601480_24614685	0/0	a0002	246	23	1	6	10	3	3	copy fasta	GZMH	chr14	24601480	24614685
GZMH_chr14_24601480_24614685	0/0	a0003	246	4	0	0	4	0	0	copy fasta	GZMH	chr14	24601480	24614685
GZMH_chr14_24601480_24614685	0/0	a0004	246	3	0	0	3	0	0	copy fasta	GZMH	chr14	24601480	24614685
GZMH_chr14_24601480_24614685	0/0	a0005	246	2	2	0	0	0	0	copy fasta	GZMH	chr14	24601480	24614685
GZMH_chr14_24601480_24614685	0/0	a0006	246	1	0	1	0	0	0	copy fasta	GZMH	chr14	24601480	24614685
GZMK_chr5_55019256_55039570	1/1	a0001	264	462	94	80	224	18	44	copy fasta	GZMK	chr5	55019256	55039570
GZMK_chr5_55019256_55039570	0/0	a0002	153	1	1	0	0	0	0	copy fasta	GZMK	chr5	55019256	55039570
GZMK_chr5_55019256_55039570	0/0	a0003	264	1	1	0	0	0	0	copy fasta	GZMK	chr5	55019256	55039570
GZMM_chr19_539053_554922	0/0	a0000	0	1	0	0	1	0	0	copy fasta	GZMM	chr19	539053	554922
GZMM_chr19_539053_554922	0/1	a0001	257	357	76	72	156	13	39	copy fasta	GZMM	chr19	539053	554922