JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
H1-3_chr6_26229212_26239987	0/0	a0004	221	1	0	0	1	0	0	copy fasta	H1-3	chr6	26229212	26239987
H1-3_chr6_26229212_26239987	0/0	a0005	221	1	0	0	0	0	1	copy fasta	H1-3	chr6	26229212	26239987
H1-3_chr6_26229212_26239987	0/0	a0006	221	1	0	1	0	0	0	copy fasta	H1-3	chr6	26229212	26239987
H1-3_chr6_26229212_26239987	0/0	a0007	221	1	1	0	0	0	0	copy fasta	H1-3	chr6	26229212	26239987
H1-4_chr6_26151329_26162115	1/1	a0001	219	377	95	74	150	12	44	copy fasta	H1-4	chr6	26151329	26162115
H1-4_chr6_26151329_26162115	0/0	a0002	219	7	0	0	7	0	0	copy fasta	H1-4	chr6	26151329	26162115
H1-4_chr6_26151329_26162115	0/0	a0003	219	1	0	0	1	0	0	copy fasta	H1-4	chr6	26151329	26162115
H1-4_chr6_26151329_26162115	0/0	a0004	219	1	0	0	1	0	0	copy fasta	H1-4	chr6	26151329	26162115
H1-4_chr6_26151329_26162115	0/0	a0005	219	1	0	0	1	0	0	copy fasta	H1-4	chr6	26151329	26162115
H1-4_chr6_26151329_26162115	0/0	a0006	219	1	1	0	0	0	0	copy fasta	H1-4	chr6	26151329	26162115
H1-5_chr6_27861792_27872588	1/1	a0001	226	368	77	68	175	8	38	copy fasta	H1-5	chr6	27861792	27872588
H1-5_chr6_27861792_27872588	0/0	a0002	226	8	8	0	0	0	0	copy fasta	H1-5	chr6	27861792	27872588
H1-5_chr6_27861792_27872588	0/0	a0003	226	5	3	2	0	0	0	copy fasta	H1-5	chr6	27861792	27872588
H1-5_chr6_27861792_27872588	0/0	a0004	226	3	0	3	0	0	0	copy fasta	H1-5	chr6	27861792	27872588
H1-5_chr6_27861792_27872588	0/0	a0005	226	2	2	0	0	0	0	copy fasta	H1-5	chr6	27861792	27872588
H1-5_chr6_27861792_27872588	0/0	a0006	226	2	0	0	0	0	2	copy fasta	H1-5	chr6	27861792	27872588
H1-5_chr6_27861792_27872588	0/0	a0007	226	1	0	0	1	0	0	copy fasta	H1-5	chr6	27861792	27872588
H1-5_chr6_27861792_27872588	0/0	a0008	226	1	0	1	0	0	0	copy fasta	H1-5	chr6	27861792	27872588
H1-6_chr6_26102412_26113135	1/1	a0001	207	147	57	22	41	7	18	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	a0002	207	115	2	24	81	0	8	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	a0003	207	73	12	25	16	5	15	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	a0004	207	58	23	8	22	2	3	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	a0005	207	3	2	1	0	0	0	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	a0006	207	1	0	0	1	0	0	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	a0007	169	1	1	0	0	0	0	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	a0008	207	1	0	0	1	0	0	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	a0009	207	1	1	0	0	0	0	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	a0010	207	1	0	1	0	0	0	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	a0011	207	1	1	0	0	0	0	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	a0012	207	1	0	0	1	0	0	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	a0013	207	1	0	0	0	0	1	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	a0014	167	1	1	0	0	0	0	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	a0015	207	1	0	0	0	0	1	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	a0016	207	1	0	0	1	0	0	copy fasta	H1-6	chr6	26102412	26113135
H1-6_chr6_26102412_26113135	0/0	a0017	207	1	0	1	0	0	0	copy fasta	H1-6	chr6	26102412	26113135
H1-7_chr12_48323980_48335279	1/1	a0001	255	221	51	40	111	3	14	copy fasta	H1-7	chr12	48323980	48335279
H1-7_chr12_48323980_48335279	0/0	a0002	255	81	29	14	25	6	7	copy fasta	H1-7	chr12	48323980	48335279
H1-7_chr12_48323980_48335279	0/0	a0003	255	78	13	18	42	1	4	copy fasta	H1-7	chr12	48323980	48335279
H1-7_chr12_48323980_48335279	0/0	a0004	255	35	3	12	3	3	14	copy fasta	H1-7	chr12	48323980	48335279
H1-7_chr12_48323980_48335279	0/0	a0005	255	4	0	0	0	1	3	copy fasta	H1-7	chr12	48323980	48335279
H1-7_chr12_48323980_48335279	0/0	a0006	255	3	0	0	3	0	0	copy fasta	H1-7	chr12	48323980	48335279
H1-7_chr12_48323980_48335279	0/0	a0007	255	2	2	0	0	0	0	copy fasta	H1-7	chr12	48323980	48335279
H1-8_chr3_129538175_129556467	1/1	a0001	346	278	52	53	126	15	30	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	a0002	346	68	3	4	54	0	7	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	a0003	346	27	13	7	2	3	2	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	a0004	346	23	19	4	0	0	0	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	a0005	150	12	2	3	4	0	3	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	a0006	346	6	6	0	0	0	0	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	a0007	150	2	1	1	0	0	0	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	a0008	346	2	0	0	0	0	2	copy fasta	H1-8	chr3	129538175	129556467