JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
H1-8_chr3_129538175_129556467	0/0	a0009	150	1	0	0	1	0	0	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	a0010	346	1	0	0	1	0	0	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	a0011	346	1	0	0	1	0	0	copy fasta	H1-8	chr3	129538175	129556467
H1-8_chr3_129538175_129556467	0/0	a0012	346	1	0	0	1	0	0	copy fasta	H1-8	chr3	129538175	129556467
H2AB1_chrX_154879972_154890558	0/0	a0001	115	167	66	30	52	5	14	copy fasta	H2AB1	chrX	154879972	154890558
H2AB1_chrX_154879972_154890558	0/0	a0002	115	139	2	28	87	6	16	copy fasta	H2AB1	chrX	154879972	154890558
H2AB1_chrX_154879972_154890558	0/0	a0003	115	8	8	0	0	0	0	copy fasta	H2AB1	chrX	154879972	154890558
H2AB1_chrX_154879972_154890558	0/0	a0004	114	1	1	0	0	0	0	copy fasta	H2AB1	chrX	154879972	154890558
H2AB1_chrX_154879972_154890558	0/0	a0005	115	1	1	0	0	0	0	copy fasta	H2AB1	chrX	154879972	154890558
H2AB1_chrX_154879972_154890558	0/0	a0006	115	1	0	0	1	0	0	copy fasta	H2AB1	chrX	154879972	154890558
H2AB1_chrX_154879972_154890558	0/0	a0007	97	1	0	0	1	0	0	copy fasta	H2AB1	chrX	154879972	154890558
H2AB2_chrX_155375709_155386299	0/0	a0001	115	201	65	43	66	8	19	copy fasta	H2AB2	chrX	155375709	155386299
H2AB2_chrX_155375709_155386299	0/0	a0002	115	21	1	4	11	1	4	copy fasta	H2AB2	chrX	155375709	155386299
H2AB2_chrX_155375709_155386299	0/0	a0003	115	3	3	0	0	0	0	copy fasta	H2AB2	chrX	155375709	155386299
H2AB2_chrX_155375709_155386299	0/0	a0004	115	2	0	0	0	0	2	copy fasta	H2AB2	chrX	155375709	155386299
H2AB2_chrX_155375709_155386299	0/0	a0005	31	1	0	0	1	0	0	copy fasta	H2AB2	chrX	155375709	155386299
H2AB2_chrX_155375709_155386299	0/0	a0006	115	1	0	1	0	0	0	copy fasta	H2AB2	chrX	155375709	155386299
H2AB3_chrX_155454415_155465005	0/0	a0001	115	190	50	37	84	5	14	copy fasta	H2AB3	chrX	155454415	155465005
H2AB3_chrX_155454415_155465005	0/0	a0002	115	19	1	4	4	2	8	copy fasta	H2AB3	chrX	155454415	155465005
H2AB3_chrX_155454415_155465005	0/0	a0003	115	3	3	0	0	0	0	copy fasta	H2AB3	chrX	155454415	155465005
H2AB3_chrX_155454415_155465005	0/0	a0004	115	1	0	0	0	0	1	copy fasta	H2AB3	chrX	155454415	155465005
H2AB3_chrX_155454415_155465005	0/0	a0005	115	1	1	0	0	0	0	copy fasta	H2AB3	chrX	155454415	155465005
H2AC11_chr6_27128043_27138535	1/1	a0001	130	406	94	78	178	18	36	copy fasta	H2AC11	chr6	27128043	27138535
H2AC12_chr6_27142106_27152562	1/1	a0001	128	381	97	62	166	16	38	copy fasta	H2AC12	chr6	27142106	27152562
H2AC12_chr6_27142106_27152562	0/0	a0002	128	1	1	0	0	0	0	copy fasta	H2AC12	chr6	27142106	27152562
H2AC13_chr6_27803173_27813667	0/0	a0001	130	408	92	70	194	10	42	copy fasta	H2AC13	chr6	27803173	27813667
H2AC14_chr6_27809302_27819777	0/0	a0001	128	383	92	68	173	10	40	copy fasta	H2AC14	chr6	27809302	27819777
H2AC14_chr6_27809302_27819777	0/0	a0002	128	1	0	0	1	0	0	copy fasta	H2AC14	chr6	27809302	27819777
H2AC15_chr6_27832880_27843375	1/1	a0001	130	387	96	66	176	13	34	copy fasta	H2AC15	chr6	27832880	27843375
H2AC15_chr6_27832880_27843375	0/0	a0002	130	18	1	1	13	1	2	copy fasta	H2AC15	chr6	27832880	27843375
H2AC15_chr6_27832880_27843375	0/0	a0003	61	1	0	1	0	0	0	copy fasta	H2AC15	chr6	27832880	27843375
H2AC15_chr6_27832880_27843375	0/0	a0004	130	1	0	0	1	0	0	copy fasta	H2AC15	chr6	27832880	27843375
H2AC15_chr6_27832880_27843375	0/0	a0005	130	1	1	0	0	0	0	copy fasta	H2AC15	chr6	27832880	27843375
H2AC16_chr6_27860317_27870798	1/1	a0001	130	373	89	74	166	8	34	copy fasta	H2AC16	chr6	27860317	27870798
H2AC16_chr6_27860317_27870798	0/0	a0002	130	1	1	0	0	0	0	copy fasta	H2AC16	chr6	27860317	27870798
H2AC17_chr6_27887699_27898185	1/1	a0001	130	405	97	70	175	15	46	copy fasta	H2AC17	chr6	27887699	27898185
H2AC17_chr6_27887699_27898185	0/0	a0002	130	1	0	0	1	0	0	copy fasta	H2AC17	chr6	27887699	27898185
H2AC17_chr6_27887699_27898185	0/0	a0003	130	1	0	0	0	1	0	copy fasta	H2AC17	chr6	27887699	27898185
H2AC17_chr6_27887699_27898185	0/0	a0004	130	1	1	0	0	0	0	copy fasta	H2AC17	chr6	27887699	27898185
H2AC18_chr1_149837218_149847750	0/0	a0001	130	317	80	67	111	14	45	copy fasta	H2AC18	chr1	149837218	149847750
H2AC18_chr1_149837218_149847750	0/0	a0002	84	1	0	0	0	0	1	copy fasta	H2AC18	chr1	149837218	149847750
H2AC18_chr1_149837218_149847750	0/0	a0003	130	1	0	1	0	0	0	copy fasta	H2AC18	chr1	149837218	149847750
H2AC18_chr1_149837218_149847750	0/0	a0004	130	1	0	0	1	0	0	copy fasta	H2AC18	chr1	149837218	149847750
H2AC19_chr1_149846061_149856594	0/0	a0001	130	328	80	58	136	12	42	copy fasta	H2AC19	chr1	149846061	149856594
H2AC1_chr6_25721063_25731562	1/1	a0001	131	413	88	70	187	18	48	copy fasta	H2AC1	chr6	25721063	25731562
H2AC1_chr6_25721063_25731562	0/0	a0002	131	1	0	0	1	0	0	copy fasta	H2AC1	chr6	25721063	25731562
H2AC20_chr1_149881918_149892411	1/1	a0001	129	367	94	68	155	10	38	copy fasta	H2AC20	chr1	149881918	149892411
H2AC20_chr1_149881918_149892411	0/0	a0002	129	1	0	0	1	0	0	copy fasta	H2AC20	chr1	149881918	149892411
H2AC21_chr1_149882469_149892965	1/1	a0001	130	362	94	70	150	10	36	copy fasta	H2AC21	chr1	149882469	149892965
H2AC25_chr1_228452364_228462873	1/1	a0001	130	442	90	80	216	16	38	copy fasta	H2AC25	chr1	228452364	228462873