JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
H2AC4_chr6_26028092_26038618	1/1	a0001	130	405	98	78	162	18	47	copy fasta	H2AC4	chr6	26028092	26038618
H2AC4_chr6_26028092_26038618	0/0	a0002	32	1	0	0	0	0	1	copy fasta	H2AC4	chr6	26028092	26038618
H2AC6_chr6_26119172_26129690	1/1	a0001	130	396	96	76	158	14	50	copy fasta	H2AC6	chr6	26119172	26129690
H2AC7_chr6_26193784_26204293	1/1	a0001	130	401	91	74	174	18	42	copy fasta	H2AC7	chr6	26193784	26204293
H2AC7_chr6_26193784_26204293	0/0	a0002	130	1	1	0	0	0	0	copy fasta	H2AC7	chr6	26193784	26204293
H2AC8_chr6_26211921_26222437	1/1	a0001	130	361	94	66	146	14	39	copy fasta	H2AC8	chr6	26211921	26222437
H2AC8_chr6_26211921_26222437	0/0	a0002	130	1	0	0	0	0	1	copy fasta	H2AC8	chr6	26211921	26222437
H2AJ_chr12_14769405_14780024	1/1	a0001	129	451	90	84	211	16	48	copy fasta	H2AJ	chr12	14769405	14780024
H2AJ_chr12_14769405_14780024	0/0	a0002	129	1	0	0	1	0	0	copy fasta	H2AJ	chr12	14769405	14780024
H2AL3_chrX_37989272_37999904	1/1	a0001	148	279	73	44	131	5	24	copy fasta	H2AL3	chrX	37989272	37999904
H2AL3_chrX_37989272_37999904	0/0	a0002	147	49	3	16	16	6	8	copy fasta	H2AL3	chrX	37989272	37999904
H2AL3_chrX_37989272_37999904	0/0	a0003	148	1	0	0	1	0	0	copy fasta	H2AL3	chrX	37989272	37999904
H2AL3_chrX_37989272_37999904	0/0	a0004	148	1	1	0	0	0	0	copy fasta	H2AL3	chrX	37989272	37999904
H2AL3_chrX_37989272_37999904	0/0	a0005	148	1	1	0	0	0	0	copy fasta	H2AL3	chrX	37989272	37999904
H2AP_chrX_37985779_37996314	1/1	a0001	117	337	74	62	154	13	32	copy fasta	H2AP	chrX	37985779	37996314
H2AP_chrX_37985779_37996314	0/0	a0002	117	3	3	0	0	0	0	copy fasta	H2AP	chrX	37985779	37996314
H2AX_chr11_119088874_119100465	1/1	a0001	143	430	94	76	194	18	46	copy fasta	H2AX	chr11	119088874	119100465
H2AZ1_chr4_99943088_99955275	1/1	a0001	128	410	92	76	186	12	42	copy fasta	H2AZ1	chr4	99943088	99955275
H2AZ2_chr7_44826978_44853087	1/1	a0001	128	406	94	82	170	14	44	copy fasta	H2AZ2	chr7	44826978	44853087
H2BC10_chr6_26267931_26278412	1/1	a0001	126	394	92	80	164	10	46	copy fasta	H2BC10	chr6	26267931	26278412
H2BC10_chr6_26267931_26278412	0/0	a0002	126	1	0	0	1	0	0	copy fasta	H2BC10	chr6	26267931	26278412
H2BC10_chr6_26267931_26278412	0/0	a0003	126	1	0	0	1	0	0	copy fasta	H2BC10	chr6	26267931	26278412
H2BC11_chr6_27127316_27137795	1/1	a0001	126	394	92	76	171	18	35	copy fasta	H2BC11	chr6	27127316	27137795
H2BC11_chr6_27127316_27137795	0/0	a0002	126	1	0	0	1	0	0	copy fasta	H2BC11	chr6	27127316	27137795
H2BC11_chr6_27127316_27137795	0/0	a0003	126	1	0	0	0	0	1	copy fasta	H2BC11	chr6	27127316	27137795
H2BC12L_chr21_43560182_43570648	0/0	a0001	126	252	48	45	130	8	21	copy fasta	H2BC12L	chr21	43560182	43570648
H2BC12L_chr21_43560182_43570648	0/1	a0002	126	130	22	28	50	4	25	copy fasta	H2BC12L	chr21	43560182	43570648
H2BC12L_chr21_43560182_43570648	0/0	a0003	126	17	16	1	0	0	0	copy fasta	H2BC12L	chr21	43560182	43570648
H2BC12L_chr21_43560182_43570648	0/0	a0004	126	3	3	0	0	0	0	copy fasta	H2BC12L	chr21	43560182	43570648
H2BC12L_chr21_43560182_43570648	0/0	a0005	126	2	0	2	0	0	0	copy fasta	H2BC12L	chr21	43560182	43570648
H2BC12L_chr21_43560182_43570648	0/0	a0006	126	2	0	0	2	0	0	copy fasta	H2BC12L	chr21	43560182	43570648
H2BC12L_chr21_43560182_43570648	0/0	a0007	126	2	0	0	2	0	0	copy fasta	H2BC12L	chr21	43560182	43570648
H2BC12L_chr21_43560182_43570648	0/0	a0008	126	1	1	0	0	0	0	copy fasta	H2BC12L	chr21	43560182	43570648
H2BC12_chr6_27141361_27151855	1/1	a0001	126	382	96	64	166	16	38	copy fasta	H2BC12	chr6	27141361	27151855
H2BC12_chr6_27141361_27151855	0/0	a0002	126	1	1	0	0	0	0	copy fasta	H2BC12	chr6	27141361	27151855
H2BC12_chr6_27141361_27151855	0/0	a0003	126	1	1	0	0	0	0	copy fasta	H2BC12	chr6	27141361	27151855
H2BC13_chr6_27802479_27812929	1/1	a0001	126	351	74	54	174	9	38	copy fasta	H2BC13	chr6	27802479	27812929
H2BC13_chr6_27802479_27812929	0/0	a0002	126	61	20	16	20	1	4	copy fasta	H2BC13	chr6	27802479	27812929
H2BC14_chr6_27810022_27820489	1/1	a0001	126	377	91	65	169	10	40	copy fasta	H2BC14	chr6	27810022	27820489
H2BC14_chr6_27810022_27820489	0/0	a0002	20	1	1	0	0	0	0	copy fasta	H2BC14	chr6	27810022	27820489
H2BC14_chr6_27810022_27820489	0/0	a0003	126	1	0	1	0	0	0	copy fasta	H2BC14	chr6	27810022	27820489
H2BC14_chr6_27810022_27820489	0/0	a0004	126	1	0	0	1	0	0	copy fasta	H2BC14	chr6	27810022	27820489
H2BC15_chr6_27833569_27844110	1/1	a0001	126	416	98	68	198	14	36	copy fasta	H2BC15	chr6	27833569	27844110
H2BC17_chr6_27888425_27898891	1/1	a0001	126	410	98	70	179	16	45	copy fasta	H2BC17	chr6	27888425	27898891
H2BC17_chr6_27888425_27898891	0/0	a0002	67	1	0	0	1	0	0	copy fasta	H2BC17	chr6	27888425	27898891
H2BC17_chr6_27888425_27898891	0/0	a0003	126	1	0	0	0	0	1	copy fasta	H2BC17	chr6	27888425	27898891
H2BC18_chr1_149806879_149817370	0/0	a0000	0	1	0	0	1	0	0	copy fasta	H2BC18	chr1	149806879	149817370
H2BC18_chr1_149806879_149817370	0/0	a0001	126	363	96	70	143	16	38	copy fasta	H2BC18	chr1	149806879	149817370
H2BC1_chr6_25721777_25732345	1/1	a0001	127	415	90	70	187	18	48	copy fasta	H2BC1	chr6	25721777	25732345
H2BC1_chr6_25721777_25732345	0/0	a0002	127	3	0	0	3	0	0	copy fasta	H2BC1	chr6	25721777	25732345