JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
H2BC21_chr1_149879459_149891682	1/1	a0001	126	364	94	67	153	12	36	copy fasta	H2BC21	chr1	149879459	149891682
H2BC21_chr1_149879459_149891682	0/0	a0002	126	1	0	0	1	0	0	copy fasta	H2BC21	chr1	149879459	149891682
H2BC21_chr1_149879459_149891682	0/0	a0003	126	1	0	1	0	0	0	copy fasta	H2BC21	chr1	149879459	149891682
H2BC26_chr1_228453103_228463558	1/1	a0001	126	447	92	84	215	16	38	copy fasta	H2BC26	chr1	228453103	228463558
H2BC26_chr1_228453103_228463558	0/0	a0002	126	1	0	0	1	0	0	copy fasta	H2BC26	chr1	228453103	228463558
H2BC3_chr6_26038227_26048713	1/0	a0001	126	413	96	74	180	16	46	copy fasta	H2BC3	chr6	26038227	26048713
H2BC3_chr6_26038227_26048713	0/0	a0002	126	6	0	0	6	0	0	copy fasta	H2BC3	chr6	26038227	26048713
H2BC4_chr6_26118467_26128926	1/1	a0001	126	402	98	74	162	16	50	copy fasta	H2BC4	chr6	26118467	26128926
H2BC5_chr6_26153122_26163607	1/1	a0001	126	378	94	78	152	12	40	copy fasta	H2BC5	chr6	26153122	26163607
H2BC5_chr6_26153122_26163607	0/0	a0002	126	2	2	0	0	0	0	copy fasta	H2BC5	chr6	26153122	26163607
H2BC6_chr6_26178761_26189230	1/1	a0001	126	199	77	40	46	11	23	copy fasta	H2BC6	chr6	26178761	26189230
H2BC6_chr6_26178761_26189230	0/0	a0002	126	170	2	22	129	3	14	copy fasta	H2BC6	chr6	26178761	26189230
H2BC6_chr6_26178761_26189230	0/0	a0003	126	15	13	2	0	0	0	copy fasta	H2BC6	chr6	26178761	26189230
H2BC6_chr6_26178761_26189230	0/0	a0004	126	2	2	0	0	0	0	copy fasta	H2BC6	chr6	26178761	26189230
H2BC6_chr6_26178761_26189230	0/0	a0005	126	1	0	0	1	0	0	copy fasta	H2BC6	chr6	26178761	26189230
H2BC6_chr6_26178761_26189230	0/0	a0006	126	1	0	0	0	0	1	copy fasta	H2BC6	chr6	26178761	26189230
H2BC7_chr6_26194516_26204988	1/1	a0001	126	400	90	74	174	18	42	copy fasta	H2BC7	chr6	26194516	26204988
H2BC8_chr6_26211200_26221688	1/1	a0001	126	363	93	66	148	14	40	copy fasta	H2BC8	chr6	26211200	26221688
H2BC8_chr6_26211200_26221688	0/0	a0002	126	3	3	0	0	0	0	copy fasta	H2BC8	chr6	26211200	26221688
H2BC9_chr6_26246614_26257075	1/1	a0001	126	378	98	70	150	14	44	copy fasta	H2BC9	chr6	26246614	26257075
H2BK1_chr7_151202837_151215488	1/1	a0001	122	358	82	78	148	12	36	copy fasta	H2BK1	chr7	151202837	151215488
H2BK1_chr7_151202837_151215488	0/0	a0002	122	50	13	2	23	2	10	copy fasta	H2BK1	chr7	151202837	151215488
H2BK1_chr7_151202837_151215488	0/0	a0003	122	1	1	0	0	0	0	copy fasta	H2BK1	chr7	151202837	151215488
H2BK1_chr7_151202837_151215488	0/0	a0004	122	1	0	0	1	0	0	copy fasta	H2BK1	chr7	151202837	151215488
H2BN1_chr17_32890433_32911586	1/1	a0001	118	412	80	83	185	16	46	copy fasta	H2BN1	chr17	32890433	32911586
H2BN1_chr17_32890433_32911586	0/0	a0002	118	12	12	0	0	0	0	copy fasta	H2BN1	chr17	32890433	32911586
H2BN1_chr17_32890433_32911586	0/0	a0003	118	1	0	0	1	0	0	copy fasta	H2BN1	chr17	32890433	32911586
H2BN1_chr17_32890433_32911586	0/0	a0004	136	1	0	1	0	0	0	copy fasta	H2BN1	chr17	32890433	32911586
H2BW1_chrX_104006147_104018708	1/1	a0001	147	184	42	24	89	12	15	copy fasta	H2BW1	chrX	104006147	104018708
H2BW1_chrX_104006147_104018708	0/0	a0002	147	141	31	31	61	1	17	copy fasta	H2BW1	chrX	104006147	104018708
H2BW1_chrX_104006147_104018708	0/0	a0003	147	1	0	1	0	0	0	copy fasta	H2BW1	chrX	104006147	104018708
H2BW1_chrX_104006147_104018708	0/0	a0004	147	1	0	1	0	0	0	copy fasta	H2BW1	chrX	104006147	104018708
H2BW1_chrX_104006147_104018708	0/0	a0005	147	1	1	0	0	0	0	copy fasta	H2BW1	chrX	104006147	104018708
H2BW1_chrX_104006147_104018708	0/0	a0006	74	1	0	0	1	0	0	copy fasta	H2BW1	chrX	104006147	104018708
H2BW1_chrX_104006147_104018708	0/0	a0007	83	1	0	0	1	0	0	copy fasta	H2BW1	chrX	104006147	104018708
H2BW2_chrX_104034956_104047454	0/0	a0000	0	1	0	0	1	0	0	copy fasta	H2BW2	chrX	104034956	104047454
H2BW2_chrX_104034956_104047454	1/1	a0001	148	212	66	40	83	3	18	copy fasta	H2BW2	chrX	104034956	104047454
H2BW2_chrX_104034956_104047454	0/0	a0002	66	111	5	21	64	8	13	copy fasta	H2BW2	chrX	104034956	104047454
H2BW2_chrX_104034956_104047454	0/0	a0003	148	6	0	0	6	0	0	copy fasta	H2BW2	chrX	104034956	104047454
H2BW2_chrX_104034956_104047454	0/0	a0004	66	1	0	0	1	0	0	copy fasta	H2BW2	chrX	104034956	104047454
H2BW2_chrX_104034956_104047454	0/0	a0005	148	1	1	0	0	0	0	copy fasta	H2BW2	chrX	104034956	104047454
H3-3A_chr1_226057716_226077019	0/0	a0001	136	434	94	76	198	18	48	copy fasta	H3-3A	chr1	226057716	226077019
H3-3B_chr17_75771434_75784779	1/1	a0001	136	431	96	72	206	15	40	copy fasta	H3-3B	chr17	75771434	75784779
H3-3B_chr17_75771434_75784779	0/0	a0002	136	1	0	0	0	1	0	copy fasta	H3-3B	chr17	75771434	75784779
H3-4_chr1_228419845_228430360	1/1	a0001	136	390	93	67	172	16	40	copy fasta	H3-4	chr1	228419845	228430360
H3-4_chr1_228419845_228430360	0/0	a0002	136	9	0	0	9	0	0	copy fasta	H3-4	chr1	228419845	228430360
H3-4_chr1_228419845_228430360	0/0	a0003	136	7	6	1	0	0	0	copy fasta	H3-4	chr1	228419845	228430360
H3-4_chr1_228419845_228430360	0/0	a0004	67	4	0	0	4	0	0	copy fasta	H3-4	chr1	228419845	228430360
H3-4_chr1_228419845_228430360	0/0	a0005	136	1	0	0	1	0	0	copy fasta	H3-4	chr1	228419845	228430360
H3-4_chr1_228419845_228430360	0/0	a0006	136	1	1	0	0	0	0	copy fasta	H3-4	chr1	228419845	228430360