JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
H3-4_chr1_228419845_228430360	0/0	a0007	136	1	0	1	0	0	0	copy fasta	H3-4	chr1	228419845	228430360
H3-4_chr1_228419845_228430360	0/0	a0008	136	1	0	1	0	0	0	copy fasta	H3-4	chr1	228419845	228430360
H3-5_chr12_31786185_31797298	1/1	a0001	135	370	61	68	188	14	37	copy fasta	H3-5	chr12	31786185	31797298
H3-5_chr12_31786185_31797298	0/0	a0002	135	52	9	6	26	0	11	copy fasta	H3-5	chr12	31786185	31797298
H3-5_chr12_31786185_31797298	0/0	a0003	135	10	10	0	0	0	0	copy fasta	H3-5	chr12	31786185	31797298
H3-5_chr12_31786185_31797298	0/0	a0004	135	6	6	0	0	0	0	copy fasta	H3-5	chr12	31786185	31797298
H3-5_chr12_31786185_31797298	0/0	a0005	135	4	4	0	0	0	0	copy fasta	H3-5	chr12	31786185	31797298
H3-5_chr12_31786185_31797298	0/0	a0006	135	2	2	0	0	0	0	copy fasta	H3-5	chr12	31786185	31797298
H3-7_chr1_143900510_143910977	0/0	a0001	136	289	71	58	120	14	26	copy fasta	H3-7	chr1	143900510	143910977
H3-7_chr1_143900510_143910977	0/0	a0002	136	7	7	0	0	0	0	copy fasta	H3-7	chr1	143900510	143910977
H3-7_chr1_143900510_143910977	0/0	a0003	136	2	1	0	1	0	0	copy fasta	H3-7	chr1	143900510	143910977
H3-7_chr1_143900510_143910977	0/0	a0004	136	1	1	0	0	0	0	copy fasta	H3-7	chr1	143900510	143910977
H3-7_chr1_143900510_143910977	0/0	a0005	136	1	0	0	1	0	0	copy fasta	H3-7	chr1	143900510	143910977
H3C10_chr6_27805051_27815536	1/1	a0001	136	392	90	66	184	10	40	copy fasta	H3C10	chr6	27805051	27815536
H3C11_chr6_27866845_27877346	1/1	a0001	136	374	88	76	162	8	38	copy fasta	H3C11	chr6	27866845	27877346
H3C12_chr6_27885315_27895826	1/1	a0001	136	402	100	70	172	14	44	copy fasta	H3C12	chr6	27885315	27895826
H3C13_chr1_149808225_149818693	0/0	a0000	0	1	0	0	1	0	0	copy fasta	H3C13	chr1	149808225	149818693
H3C13_chr1_149808225_149818693	0/0	a0001	136	373	98	74	145	16	40	copy fasta	H3C13	chr1	149808225	149818693
H3C14_chr1_149835687_149846208	0/0	a0001	136	302	80	62	106	14	40	copy fasta	H3C14	chr1	149835687	149846208
H3C15_chr1_149847608_149858125	0/0	a0001	136	332	84	66	124	14	44	copy fasta	H3C15	chr1	149847608	149858125
H3C1_chr6_26015451_26025958	1/1	a0001	136	392	96	66	164	18	46	copy fasta	H3C1	chr6	26015451	26025958
H3C1_chr6_26015451_26025958	0/0	a0002	136	2	0	0	2	0	0	copy fasta	H3C1	chr6	26015451	26025958
H3C1_chr6_26015451_26025958	0/0	a0003	136	2	0	0	2	0	0	copy fasta	H3C1	chr6	26015451	26025958
H3C2_chr6_26026589_26037099	1/1	a0001	136	396	96	78	154	18	48	copy fasta	H3C2	chr6	26026589	26037099
H3C3_chr6_26040384_26050869	1/0	a0001	136	421	94	70	194	16	46	copy fasta	H3C3	chr6	26040384	26050869
H3C4_chr6_26191784_26202286	1/1	a0001	136	396	96	70	168	18	42	copy fasta	H3C4	chr6	26191784	26202286
H3C6_chr6_26220135_26230616	1/1	a0001	136	353	98	68	129	14	42	copy fasta	H3C6	chr6	26220135	26230616
H3C6_chr6_26220135_26230616	0/0	a0002	136	1	0	0	1	0	0	copy fasta	H3C6	chr6	26220135	26230616
H3C7_chr6_26245142_26255635	0/0	a0001	136	372	98	72	146	14	42	copy fasta	H3C7	chr6	26245142	26255635
H3C8_chr6_26265918_26276413	1/1	a0001	136	397	90	80	171	8	46	copy fasta	H3C8	chr6	26265918	26276413
H3C8_chr6_26265918_26276413	0/0	a0002	136	1	0	0	1	0	0	copy fasta	H3C8	chr6	26265918	26276413
H3Y1_chr5_17649868_17660849	1/1	a0001	136	373	96	72	152	12	39	copy fasta	H3Y1	chr5	17649868	17660849
H3Y1_chr5_17649868_17660849	0/0	a0002	136	1	0	1	0	0	0	copy fasta	H3Y1	chr5	17649868	17660849
H3Y1_chr5_17649868_17660849	0/0	a0003	136	1	0	1	0	0	0	copy fasta	H3Y1	chr5	17649868	17660849
H3Y1_chr5_17649868_17660849	0/0	a0004	136	1	0	0	0	0	1	copy fasta	H3Y1	chr5	17649868	17660849
H3Y2_chr5_17485967_17497076	1/1	a0001	147	386	74	68	184	13	45	copy fasta	H3Y2	chr5	17485967	17497076
H3Y2_chr5_17485967_17497076	0/0	a0002	147	7	0	6	0	0	1	copy fasta	H3Y2	chr5	17485967	17497076
H3Y2_chr5_17485967_17497076	0/0	a0003	147	4	4	0	0	0	0	copy fasta	H3Y2	chr5	17485967	17497076
H3Y2_chr5_17485967_17497076	0/0	a0004	96	1	0	0	1	0	0	copy fasta	H3Y2	chr5	17485967	17497076
H3Y2_chr5_17485967_17497076	0/0	a0005	147	1	0	0	0	1	0	copy fasta	H3Y2	chr5	17485967	17497076
H3Y2_chr5_17485967_17497076	0/0	a0006	147	1	0	0	1	0	0	copy fasta	H3Y2	chr5	17485967	17497076
H4C11_chr6_27819092_27829480	0/0	a0000	0	1	0	1	0	0	0	copy fasta	H4C11	chr6	27819092	27829480
H4C11_chr6_27819092_27829480	0/0	a0001	103	395	92	81	170	16	36	copy fasta	H4C11	chr6	27819092	27829480
H4C12_chr6_27826174_27836560	0/1	a0001	103	419	98	86	178	16	40	copy fasta	H4C12	chr6	27826174	27836560
H4C13_chr6_27868148_27878534	1/1	a0001	103	382	88	76	168	8	40	copy fasta	H4C13	chr6	27868148	27878534
H4C13_chr6_27868148_27878534	0/0	a0002	103	2	0	0	0	0	2	copy fasta	H4C13	chr6	27868148	27878534
H4C14_chr1_149827657_149838052	0/0	a0001	103	236	76	56	62	6	36	copy fasta	H4C14	chr1	149827657	149838052
H4C15_chr1_149855764_149866159	0/0	a0001	103	206	54	38	84	8	22	copy fasta	H4C15	chr1	149855764	149866159
H4C16_chr12_14765720_14776131	1/1	a0001	103	438	90	78	206	16	46	copy fasta	H4C16	chr12	14765720	14776131
H4C1_chr6_26016649_26027050	1/1	a0001	103	398	96	64	172	18	46	copy fasta	H4C1	chr6	26016649	26027050