JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
H4C2_chr6_26021896_26032283	1/1	a0001	103	399	96	74	162	18	47	copy fasta	H4C2	chr6	26021896	26032283
H4C2_chr6_26021896_26032283	0/0	a0002	103	1	0	0	0	0	1	copy fasta	H4C2	chr6	26021896	26032283
H4C3_chr6_26098933_26109337	1/1	a0001	103	407	100	77	172	14	42	copy fasta	H4C3	chr6	26098933	26109337
H4C3_chr6_26098933_26109337	0/0	a0002	11	1	0	1	0	0	0	copy fasta	H4C3	chr6	26098933	26109337
H4C4_chr6_26183710_26194112	1/1	a0001	103	362	95	60	152	14	39	copy fasta	H4C4	chr6	26183710	26194112
H4C4_chr6_26183710_26194112	0/0	a0002	7	4	0	0	4	0	0	copy fasta	H4C4	chr6	26183710	26194112
H4C4_chr6_26183710_26194112	0/0	a0003	103	2	0	0	2	0	0	copy fasta	H4C4	chr6	26183710	26194112
H4C4_chr6_26183710_26194112	0/0	a0004	103	1	0	0	1	0	0	copy fasta	H4C4	chr6	26183710	26194112
H4C4_chr6_26183710_26194112	0/0	a0005	103	1	0	0	0	0	1	copy fasta	H4C4	chr6	26183710	26194112
H4C4_chr6_26183710_26194112	0/0	a0006	103	1	1	0	0	0	0	copy fasta	H4C4	chr6	26183710	26194112
H4C4_chr6_26183710_26194112	0/0	a0007	103	1	0	0	1	0	0	copy fasta	H4C4	chr6	26183710	26194112
H4C5_chr6_26199610_26210021	1/1	a0001	103	407	94	72	179	18	42	copy fasta	H4C5	chr6	26199610	26210021
H4C5_chr6_26199610_26210021	0/0	a0002	103	1	0	0	1	0	0	copy fasta	H4C5	chr6	26199610	26210021
H4C6_chr6_26235393_26245793	1/1	a0001	103	358	97	66	135	14	44	copy fasta	H4C6	chr6	26235393	26245793
H4C6_chr6_26235393_26245793	0/0	a0002	103	1	1	0	0	0	0	copy fasta	H4C6	chr6	26235393	26245793
H4C6_chr6_26235393_26245793	0/0	a0003	103	1	0	0	1	0	0	copy fasta	H4C6	chr6	26235393	26245793
H4C7_chr6_26241611_26251996	1/1	a0001	98	328	91	58	136	5	36	copy fasta	H4C7	chr6	26241611	26251996
H4C7_chr6_26241611_26251996	0/0	a0002	98	36	5	9	7	9	6	copy fasta	H4C7	chr6	26241611	26251996
H4C7_chr6_26241611_26251996	0/0	a0003	98	1	0	0	1	0	0	copy fasta	H4C7	chr6	26241611	26251996
H4C7_chr6_26241611_26251996	0/0	a0004	98	1	0	1	0	0	0	copy fasta	H4C7	chr6	26241611	26251996
H4C8_chr6_26280126_26290534	1/1	a0001	103	404	90	79	171	16	46	copy fasta	H4C8	chr6	26280126	26290534
H4C8_chr6_26280126_26290534	0/0	a0002	103	1	0	0	1	0	0	copy fasta	H4C8	chr6	26280126	26290534
H4C8_chr6_26280126_26290534	0/0	a0003	103	1	0	1	0	0	0	copy fasta	H4C8	chr6	26280126	26290534
H4C9_chr6_27134282_27144678	1/1	a0001	103	391	93	74	166	18	38	copy fasta	H4C9	chr6	27134282	27144678
H4C9_chr6_27134282_27144678	0/0	a0002	103	1	1	0	0	0	0	copy fasta	H4C9	chr6	27134282	27144678
H6PD_chr1_9229774_9276337	1/0	a0001	791	214	46	44	82	9	32	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	a0002	791	140	41	22	66	2	9	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	a0003	791	12	0	0	10	1	1	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	a0004	791	11	0	5	0	4	2	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	a0005	791	3	0	2	0	1	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	a0006	791	3	3	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/1	a0007	791	2	0	1	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	a0008	791	2	2	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	a0009	791	2	0	1	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	a0010	791	1	0	0	0	1	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	a0011	791	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	a0012	791	1	0	1	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	a0013	791	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	a0014	791	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	a0015	791	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	a0016	791	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	a0017	791	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	a0018	791	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	a0019	791	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	a0020	791	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	a0021	791	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	a0022	791	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	a0023	791	1	0	0	1	0	0	copy fasta	H6PD	chr1	9229774	9276337
H6PD_chr1_9229774_9276337	0/0	a0024	791	1	1	0	0	0	0	copy fasta	H6PD	chr1	9229774	9276337
HAAO_chr2_42762089_42797583	0/1	a0001	286	187	55	48	40	9	34	copy fasta	HAAO	chr2	42762089	42797583