JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HAAO_chr2_42762089_42797583	0/0	a0002	286	154	23	27	90	3	11	copy fasta	HAAO	chr2	42762089	42797583
HAAO_chr2_42762089_42797583	1/0	a0003	286	67	14	7	36	4	5	copy fasta	HAAO	chr2	42762089	42797583
HAAO_chr2_42762089_42797583	0/0	a0004	286	1	0	0	1	0	0	copy fasta	HAAO	chr2	42762089	42797583
HAAO_chr2_42762089_42797583	0/0	a0005	286	1	0	0	1	0	0	copy fasta	HAAO	chr2	42762089	42797583
HABP2_chr10_113548053_113594602	1/1	a0001	560	429	97	71	197	17	45	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	a0002	560	5	0	4	0	0	1	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	a0003	560	3	0	0	3	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	a0004	560	2	0	1	0	1	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	a0005	560	1	0	0	1	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	a0006	560	1	1	0	0	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	a0007	560	1	1	0	0	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	a0008	560	1	0	0	1	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	a0009	560	1	0	1	0	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	a0010	560	1	1	0	0	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP2_chr10_113548053_113594602	0/0	a0011	560	1	0	1	0	0	0	copy fasta	HABP2	chr10	113548053	113594602
HABP4_chr9_96445169_96496336	1/1	a0001	413	305	84	58	110	16	35	copy fasta	HABP4	chr9	96445169	96496336
HABP4_chr9_96445169_96496336	0/0	a0002	413	1	0	0	0	0	1	copy fasta	HABP4	chr9	96445169	96496336
HACD1_chr10_17584032_17622374	0/1	a0001	288	259	58	55	111	9	25	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	a0002	288	61	1	6	46	4	4	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	a0003	288	55	26	15	4	4	6	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	a0004	288	26	6	0	19	1	0	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	a0005	288	3	3	0	0	0	0	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	a0006	249	1	0	0	1	0	0	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	a0007	288	1	1	0	0	0	0	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	a0008	288	1	1	0	0	0	0	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	1/0	a0009	288	1	0	0	0	0	0	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	a0010	288	1	0	0	0	0	1	copy fasta	HACD1	chr10	17584032	17622374
HACD1_chr10_17584032_17622374	0/0	a0011	288	1	0	0	1	0	0	copy fasta	HACD1	chr10	17584032	17622374
HACD2_chr3_123486554_123590053	1/1	a0001	254	349	88	60	151	12	36	copy fasta	HACD2	chr3	123486554	123590053
HACD2_chr3_123486554_123590053	0/0	a0002	254	1	0	0	1	0	0	copy fasta	HACD2	chr3	123486554	123590053
HACD3_chr15_65525463_65583349	1/1	a0001	362	303	87	47	117	12	38	copy fasta	HACD3	chr15	65525463	65583349
HACD3_chr15_65525463_65583349	0/0	a0002	362	23	7	5	7	0	4	copy fasta	HACD3	chr15	65525463	65583349
HACD3_chr15_65525463_65583349	0/0	a0003	362	1	0	1	0	0	0	copy fasta	HACD3	chr15	65525463	65583349
HACD3_chr15_65525463_65583349	0/0	a0004	362	1	0	1	0	0	0	copy fasta	HACD3	chr15	65525463	65583349
HACD4_chr9_20994509_21036640	1/1	a0001	232	244	64	46	93	11	28	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	a0002	232	186	34	20	117	3	12	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	a0003	232	1	0	0	1	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	a0004	232	1	0	0	1	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	a0005	232	1	0	1	0	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACD4_chr9_20994509_21036640	0/0	a0006	232	1	0	1	0	0	0	copy fasta	HACD4	chr9	20994509	21036640
HACE1_chr6_104723094_104864919	1/1	a0001	909	346	82	60	152	14	36	copy fasta	HACE1	chr6	104723094	104864919
HACL1_chr3_15555699_15606569	1/1	a0001	578	418	94	73	194	8	47	copy fasta	HACL1	chr3	15555699	15606569
HACL1_chr3_15555699_15606569	0/0	a0002	578	4	0	1	0	2	1	copy fasta	HACL1	chr3	15555699	15606569
HACL1_chr3_15555699_15606569	0/0	a0003	578	2	2	0	0	0	0	copy fasta	HACL1	chr3	15555699	15606569
HACL1_chr3_15555699_15606569	0/0	a0004	578	1	0	0	1	0	0	copy fasta	HACL1	chr3	15555699	15606569
HACL1_chr3_15555699_15606569	0/0	a0005	578	1	1	0	0	0	0	copy fasta	HACL1	chr3	15555699	15606569
HACL1_chr3_15555699_15606569	0/0	a0006	578	1	0	0	1	0	0	copy fasta	HACL1	chr3	15555699	15606569
HACL1_chr3_15555699_15606569	0/0	a0007	578	1	1	0	0	0	0	copy fasta	HACL1	chr3	15555699	15606569
HADHA_chr2_26185635_26249632	1/1	a0001	763	259	62	64	101	4	26	copy fasta	HADHA	chr2	26185635	26249632
HADHA_chr2_26185635_26249632	0/0	a0002	763	10	10	0	0	0	0	copy fasta	HADHA	chr2	26185635	26249632