JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HADHA_chr2_26185635_26249632	0/0	a0003	763	2	2	0	0	0	0	copy fasta	HADHA	chr2	26185635	26249632
HADHA_chr2_26185635_26249632	0/0	a0004	763	1	0	0	1	0	0	copy fasta	HADHA	chr2	26185635	26249632
HADHA_chr2_26185635_26249632	0/0	a0005	763	1	0	1	0	0	0	copy fasta	HADHA	chr2	26185635	26249632
HADHA_chr2_26185635_26249632	0/0	a0006	763	1	0	1	0	0	0	copy fasta	HADHA	chr2	26185635	26249632
HADHB_chr2_26239939_26295465	0/1	a0001	475	188	60	48	42	14	23	copy fasta	HADHB	chr2	26239939	26295465
HADHB_chr2_26239939_26295465	1/0	a0002	474	95	14	20	54	0	6	copy fasta	HADHB	chr2	26239939	26295465
HADHB_chr2_26239939_26295465	0/0	a0003	475	5	3	2	0	0	0	copy fasta	HADHB	chr2	26239939	26295465
HADHB_chr2_26239939_26295465	0/0	a0004	474	1	0	0	0	0	1	copy fasta	HADHB	chr2	26239939	26295465
HADHB_chr2_26239939_26295465	0/0	a0005	475	1	1	0	0	0	0	copy fasta	HADHB	chr2	26239939	26295465
HADH_chr4_107984889_108040171	0/0	a0001	314	249	50	59	90	15	35	copy fasta	HADH	chr4	107984889	108040171
HADH_chr4_107984889_108040171	1/1	a0002	314	45	30	3	5	0	5	copy fasta	HADH	chr4	107984889	108040171
HADH_chr4_107984889_108040171	0/0	a0003	314	3	3	0	0	0	0	copy fasta	HADH	chr4	107984889	108040171
HADH_chr4_107984889_108040171	0/0	a0004	314	3	0	0	3	0	0	copy fasta	HADH	chr4	107984889	108040171
HADH_chr4_107984889_108040171	0/0	a0005	314	2	2	0	0	0	0	copy fasta	HADH	chr4	107984889	108040171
HADH_chr4_107984889_108040171	0/0	a0006	314	1	1	0	0	0	0	copy fasta	HADH	chr4	107984889	108040171
HADH_chr4_107984889_108040171	0/0	a0007	314	1	0	0	0	1	0	copy fasta	HADH	chr4	107984889	108040171
HAGHL_chr16_722106_734715	1/1	a0001	282	390	99	79	153	12	45	copy fasta	HAGHL	chr16	722106	734715
HAGHL_chr16_722106_734715	0/0	a0002	282	3	0	1	0	0	2	copy fasta	HAGHL	chr16	722106	734715
HAGHL_chr16_722106_734715	0/0	a0003	282	1	1	0	0	0	0	copy fasta	HAGHL	chr16	722106	734715
HAGHL_chr16_722106_734715	0/0	a0004	282	1	0	0	1	0	0	copy fasta	HAGHL	chr16	722106	734715
HAGHL_chr16_722106_734715	0/0	a0005	282	1	0	0	1	0	0	copy fasta	HAGHL	chr16	722106	734715
HAGHL_chr16_722106_734715	0/0	a0006	282	1	0	0	0	0	1	copy fasta	HAGHL	chr16	722106	734715
HAGHL_chr16_722106_734715	0/0	a0007	263	1	0	0	1	0	0	copy fasta	HAGHL	chr16	722106	734715
HAGH_chr16_1802629_1831825	1/1	a0001	308	402	90	72	183	10	45	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	a0002	308	21	0	0	19	1	1	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	a0003	308	3	3	0	0	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	a0004	308	2	0	1	0	0	1	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	a0005	4	1	1	0	0	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	a0006	308	1	0	0	0	0	1	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	a0007	264	1	0	0	1	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	a0008	308	1	0	0	1	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	a0009	308	1	0	0	1	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	a0010	193	1	0	0	1	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	a0011	308	1	0	1	0	0	0	copy fasta	HAGH	chr16	1802629	1831825
HAGH_chr16_1802629_1831825	0/0	a0012	308	1	0	0	0	1	0	copy fasta	HAGH	chr16	1802629	1831825
HAL_chr12_95967662_96001344	0/1	a0001	657	378	88	58	176	12	43	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	1/0	a0002	657	31	1	14	7	5	3	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	a0003	657	2	0	0	2	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	a0004	657	2	2	0	0	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	a0005	657	1	1	0	0	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	a0006	657	1	0	0	1	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	a0007	657	1	0	0	1	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	a0008	657	1	0	0	1	0	0	copy fasta	HAL	chr12	95967662	96001344
HAL_chr12_95967662_96001344	0/0	a0009	657	1	0	0	0	1	0	copy fasta	HAL	chr12	95967662	96001344
HAMP_chr19_35277528_35290143	1/1	a0001	84	448	100	82	200	16	48	copy fasta	HAMP	chr19	35277528	35290143
HAND1_chr5_154469972_154483227	1/1	a0001	215	444	91	77	206	18	50	copy fasta	HAND1	chr5	154469972	154483227
HAND1_chr5_154469972_154483227	0/0	a0002	215	1	1	0	0	0	0	copy fasta	HAND1	chr5	154469972	154483227
HAND1_chr5_154469972_154483227	0/0	a0003	215	1	0	1	0	0	0	copy fasta	HAND1	chr5	154469972	154483227
HAND2_chr4_173521091_173535229	1/1	a0001	217	454	97	78	213	16	48	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	a0002	217	4	0	0	4	0	0	copy fasta	HAND2	chr4	173521091	173535229