Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ALDH1L1_chr3_126098570_126185586	1/1	a0001	902	138	25	22	67	10	12	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	a0002	902	47	7	2	33	2	3	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	a0003	902	42	6	5	24	0	7	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	a0004	902	20	5	10	4	0	1	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	a0005	902	19	16	3	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	a0006	902	10	2	6	2	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	a0007	902	9	5	2	2	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	a0008	902	8	5	3	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	a0009	902	8	2	5	0	0	1	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	a0010	902	7	5	2	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	a0011	902	6	6	0	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	a0012	902	3	3	0	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	a0013	902	2	2	0	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	a0014	902	2	2	0	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	a0015	902	2	0	0	2	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	a0016	902	2	0	0	2	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	a0017	902	2	0	2	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	a0018	902	1	0	1	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	a0019	902	1	1	0	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	a0020	902	1	0	1	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	a0021	902	1	0	0	1	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	a0022	902	1	1	0	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	a0023	902	1	1	0	0	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	a0024	902	1	0	0	1	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	a0025	902	1	0	0	1	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	a0026	902	1	0	0	1	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	a0027	902	1	0	0	1	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L1_chr3_126098570_126185586	0/0	a0028	902	1	0	0	1	0	0	copy fasta	ALDH1L1	chr3	126098570	126185586
ALDH1L2_chr12_105014790_105089458	1/1	a0001	923	366	83	67	161	10	43	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	a0002	923	5	0	0	5	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	a0003	923	4	0	0	4	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	a0004	126	2	2	0	0	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	a0005	923	2	0	0	2	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	a0006	923	2	2	0	0	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	a0007	923	1	0	0	1	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	a0008	923	1	0	0	1	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	a0009	923	1	0	0	0	0	1	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	a0010	923	1	1	0	0	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH1L2_chr12_105014790_105089458	0/0	a0011	923	1	0	1	0	0	0	copy fasta	ALDH1L2	chr12	105014790	105089458
ALDH2_chr12_111761933_111822532	1/1	a0001	517	311	87	52	128	6	36	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	a0002	517	25	0	0	25	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	a0003	517	4	0	0	0	0	4	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	a0004	517	1	1	0	0	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH2_chr12_111761933_111822532	0/0	a0005	517	1	0	0	1	0	0	copy fasta	ALDH2	chr12	111761933	111822532
ALDH3A1_chr17_19732989_19753298	0/0	a0001	453	161	31	22	84	6	18	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	a0002	453	158	17	39	82	5	15	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	1/1	a0003	453	79	26	23	13	4	11	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	a0004	453	11	0	0	11	0	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	a0005	453	5	5	0	0	0	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	a0006	453	2	0	0	2	0	0	copy fasta	ALDH3A1	chr17	19732989	19753298