JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HAND2_chr4_173521091_173535229	0/0	a0003	217	1	0	0	1	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAND2_chr4_173521091_173535229	0/0	a0004	217	1	1	0	0	0	0	copy fasta	HAND2	chr4	173521091	173535229
HAO1_chr20_7877985_7945458	1/1	a0001	370	345	96	60	133	12	42	copy fasta	HAO1	chr20	7877985	7945458
HAO1_chr20_7877985_7945458	0/0	a0002	370	2	2	0	0	0	0	copy fasta	HAO1	chr20	7877985	7945458
HAO1_chr20_7877985_7945458	0/0	a0003	370	1	0	0	1	0	0	copy fasta	HAO1	chr20	7877985	7945458
HAO2_chr1_119363785_119399130	1/1	a0001	351	403	74	69	192	18	48	copy fasta	HAO2	chr1	119363785	119399130
HAO2_chr1_119363785_119399130	0/0	a0002	351	20	19	1	0	0	0	copy fasta	HAO2	chr1	119363785	119399130
HAO2_chr1_119363785_119399130	0/0	a0003	351	2	0	0	2	0	0	copy fasta	HAO2	chr1	119363785	119399130
HAO2_chr1_119363785_119399130	0/0	a0004	351	1	0	0	1	0	0	copy fasta	HAO2	chr1	119363785	119399130
HAO2_chr1_119363785_119399130	0/0	a0005	194	1	1	0	0	0	0	copy fasta	HAO2	chr1	119363785	119399130
HAO2_chr1_119363785_119399130	0/0	a0006	210	1	0	0	1	0	0	copy fasta	HAO2	chr1	119363785	119399130
HAP1_chr17_41717640_41739643	0/1	a0001	619	105	18	23	48	2	13	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0002	619	71	16	20	23	8	4	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0003	619	66	2	13	34	4	13	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	1/0	a0004	619	25	4	2	14	2	2	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0005	619	18	11	2	3	1	1	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0006	615	14	13	1	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0007	619	8	0	5	2	0	1	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0008	619	8	0	2	4	1	1	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0009	619	6	6	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0010	619	5	4	1	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0011	619	5	5	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0012	619	4	4	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0013	619	3	3	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0014	615	3	3	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0015	619	3	0	0	3	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0016	619	3	3	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0017	619	2	0	1	1	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0018	619	2	0	0	2	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0019	619	1	1	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0020	615	1	1	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0021	619	1	0	1	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0022	615	1	1	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0023	619	1	0	0	1	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0024	615	1	0	0	1	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0025	619	1	0	0	1	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0026	619	1	0	0	1	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0027	619	1	1	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0028	619	1	0	1	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0029	619	1	0	0	1	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0030	615	1	1	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0031	619	1	1	0	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0032	103	1	0	0	1	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0033	619	1	0	1	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0034	619	1	0	0	1	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0035	619	1	0	1	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0036	619	1	0	0	1	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0037	619	1	0	1	0	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0038	619	1	0	0	1	0	0	copy fasta	HAP1	chr17	41717640	41739643
HAP1_chr17_41717640_41739643	0/0	a0039	619	1	0	0	0	0	1	copy fasta	HAP1	chr17	41717640	41739643