JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HAS1_chr19_51708112_51728991	0/0	a0010	577	1	1	0	0	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	a0011	577	1	0	1	0	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	a0012	577	1	0	0	0	1	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	a0013	577	1	0	0	1	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	a0014	577	1	0	0	0	0	1	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	a0015	577	1	0	0	1	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS1_chr19_51708112_51728991	0/0	a0016	577	1	0	0	1	0	0	copy fasta	HAS1	chr19	51708112	51728991
HAS2_chr8_121607116_121646440	1/1	a0001	552	376	92	76	150	14	42	copy fasta	HAS2	chr8	121607116	121646440
HAS3_chr16_69100653_69122660	1/1	a0001	553	403	91	77	174	14	45	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	a0002	553	2	0	1	0	0	1	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	a0003	553	2	2	0	0	0	0	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	a0004	553	1	0	0	1	0	0	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	a0005	553	1	1	0	0	0	0	copy fasta	HAS3	chr16	69100653	69122660
HAS3_chr16_69100653_69122660	0/0	a0006	553	1	0	0	1	0	0	copy fasta	HAS3	chr16	69100653	69122660
HASPIN_chr17_3718903_3731699	1/1	a0001	798	206	32	50	103	6	13	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	a0002	798	106	1	17	58	5	25	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	a0003	798	81	49	12	13	5	2	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	a0004	798	2	2	0	0	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	a0005	798	2	2	0	0	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	a0006	798	2	0	2	0	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	a0007	798	2	0	0	0	2	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	a0008	786	1	1	0	0	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	a0009	798	1	0	0	1	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	a0010	798	1	1	0	0	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	a0011	798	1	1	0	0	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	a0012	798	1	0	0	1	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	a0013	798	1	0	1	0	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	a0014	798	1	1	0	0	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	a0015	798	1	0	0	1	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	a0016	798	1	0	0	1	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	a0017	798	1	0	0	1	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	a0018	798	1	0	0	1	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	a0019	798	1	0	0	1	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HASPIN_chr17_3718903_3731699	0/0	a0020	798	1	0	0	1	0	0	copy fasta	HASPIN	chr17	3718903	3731699
HAT1_chr2_171917461_171988686	0/1	a0001	419	317	68	58	140	8	42	copy fasta	HAT1	chr2	171917461	171988686
HAT1_chr2_171917461_171988686	1/0	a0002	419	9	8	0	0	0	0	copy fasta	HAT1	chr2	171917461	171988686
HAUS1_chr18_46099385_46133333	1/1	a0001	278	361	83	64	151	16	45	copy fasta	HAUS1	chr18	46099385	46133333
HAUS1_chr18_46099385_46133333	0/0	a0002	278	3	3	0	0	0	0	copy fasta	HAUS1	chr18	46099385	46133333
HAUS1_chr18_46099385_46133333	0/0	a0003	278	2	2	0	0	0	0	copy fasta	HAUS1	chr18	46099385	46133333
HAUS1_chr18_46099385_46133333	0/0	a0004	278	2	2	0	0	0	0	copy fasta	HAUS1	chr18	46099385	46133333
HAUS1_chr18_46099385_46133333	0/0	a0005	278	2	0	0	2	0	0	copy fasta	HAUS1	chr18	46099385	46133333
HAUS1_chr18_46099385_46133333	0/0	a0006	278	1	0	0	0	0	1	copy fasta	HAUS1	chr18	46099385	46133333
HAUS1_chr18_46099385_46133333	0/0	a0007	25	1	0	0	1	0	0	copy fasta	HAUS1	chr18	46099385	46133333
HAUS2_chr15_42543838_42574994	1/1	a0001	235	346	86	68	128	18	44	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	a0002	235	2	2	0	0	0	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	a0003	235	1	0	0	1	0	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS2_chr15_42543838_42574994	0/0	a0004	208	1	0	0	1	0	0	copy fasta	HAUS2	chr15	42543838	42574994
HAUS3_chr4_2223349_2247121	1/1	a0001	603	300	79	52	140	9	18	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	a0002	603	24	9	5	7	1	2	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	a0003	603	2	2	0	0	0	0	copy fasta	HAUS3	chr4	2223349	2247121