JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HAUS3_chr4_2223349_2247121	0/0	a0004	603	1	0	0	1	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	a0005	603	1	0	1	0	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	a0006	603	1	1	0	0	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS3_chr4_2223349_2247121	0/0	a0007	603	1	1	0	0	0	0	copy fasta	HAUS3	chr4	2223349	2247121
HAUS4_chr14_22941228_22962090	1/0	a0001	363	311	93	64	98	14	41	copy fasta	HAUS4	chr14	22941228	22962090
HAUS4_chr14_22941228_22962090	0/0	a0002	363	3	3	0	0	0	0	copy fasta	HAUS4	chr14	22941228	22962090
HAUS4_chr14_22941228_22962090	0/0	a0003	363	1	0	0	1	0	0	copy fasta	HAUS4	chr14	22941228	22962090
HAUS4_chr14_22941228_22962090	0/0	a0004	363	1	0	0	0	0	1	copy fasta	HAUS4	chr14	22941228	22962090
HAUS4_chr14_22941228_22962090	0/0	a0005	363	1	0	0	1	0	0	copy fasta	HAUS4	chr14	22941228	22962090
HAUS5_chr19_35607735_35630355	1/1	a0001	633	375	78	80	169	11	35	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	a0002	633	28	14	0	13	0	1	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	a0003	633	6	1	1	0	1	3	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	a0004	633	5	0	0	5	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	a0005	633	4	4	0	0	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	a0006	633	2	0	0	2	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	a0007	633	2	2	0	0	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	a0008	633	1	0	0	1	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	a0009	633	1	0	1	0	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	a0010	633	1	0	0	1	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	a0011	633	1	0	0	1	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	a0012	633	1	1	0	0	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	a0013	633	1	0	0	0	0	1	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	a0014	633	1	0	0	1	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS5_chr19_35607735_35630355	0/0	a0015	633	1	0	0	1	0	0	copy fasta	HAUS5	chr19	35607735	35630355
HAUS6_chr9_19048141_19107904	1/0	a0001	955	298	64	48	142	10	33	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	a0002	955	39	7	7	22	1	2	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	a0003	955	23	4	7	4	3	5	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/1	a0004	955	9	1	2	0	2	3	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	a0005	955	8	0	0	6	0	2	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	a0006	955	5	5	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	a0007	955	4	3	1	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	a0008	955	2	2	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	a0009	955	2	2	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	a0010	955	2	2	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	a0011	955	2	0	0	1	0	1	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	a0012	955	1	1	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	a0013	955	1	1	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	a0014	955	1	1	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	a0015	955	1	0	1	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	a0016	955	1	0	0	1	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	a0017	955	1	1	0	0	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	a0018	955	1	0	0	0	0	1	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	a0019	955	1	0	0	1	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	a0020	941	1	0	0	1	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	a0021	955	1	0	0	0	0	1	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	a0022	955	1	0	0	1	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS6_chr9_19048141_19107904	0/0	a0023	955	1	0	0	1	0	0	copy fasta	HAUS6	chr9	19048141	19107904
HAUS7_chrX_153442668_153475576	1/1	a0001	358	305	72	49	142	10	30	copy fasta	HAUS7	chrX	153442668	153475576
HAUS7_chrX_153442668_153475576	0/0	a0002	358	4	4	0	0	0	0	copy fasta	HAUS7	chrX	153442668	153475576
HAUS7_chrX_153442668_153475576	0/0	a0003	358	3	2	1	0	0	0	copy fasta	HAUS7	chrX	153442668	153475576