JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HBEGF_chr5_140327843_140351603	1/1	a0001	208	428	98	70	196	18	44	copy fasta	HBEGF	chr5	140327843	140351603
HBG1_chr11_5243269_5254857	0/0	a0001	147	370	88	62	168	14	38	copy fasta	HBG1	chr11	5243269	5254857
HBG1_chr11_5243269_5254857	1/0	a0002	147	57	5	12	31	0	8	copy fasta	HBG1	chr11	5243269	5254857
HBG1_chr11_5243269_5254857	0/0	a0003	3	3	0	2	1	0	0	copy fasta	HBG1	chr11	5243269	5254857
HBG1_chr11_5243269_5254857	0/0	a0004	147	2	1	0	1	0	0	copy fasta	HBG1	chr11	5243269	5254857
HBG1_chr11_5243269_5254857	0/0	a0005	9	1	0	0	1	0	0	copy fasta	HBG1	chr11	5243269	5254857
HBG2_chr11_5248188_5259781	0/0	a0000	0	3	0	2	1	0	0	copy fasta	HBG2	chr11	5248188	5259781
HBG2_chr11_5248188_5259781	1/1	a0001	147	426	94	72	201	14	43	copy fasta	HBG2	chr11	5248188	5259781
HBG2_chr11_5248188_5259781	0/0	a0002	147	1	0	0	0	0	1	copy fasta	HBG2	chr11	5248188	5259781
HBM_chr16_160978_171764	1/1	a0001	141	364	82	64	169	14	33	copy fasta	HBM	chr16	160978	171764
HBM_chr16_160978_171764	0/0	a0002	141	3	3	0	0	0	0	copy fasta	HBM	chr16	160978	171764
HBM_chr16_160978_171764	0/0	a0003	141	1	1	0	0	0	0	copy fasta	HBM	chr16	160978	171764
HBM_chr16_160978_171764	0/0	a0004	141	1	0	0	1	0	0	copy fasta	HBM	chr16	160978	171764
HBM_chr16_160978_171764	0/0	a0005	141	1	0	0	0	0	1	copy fasta	HBM	chr16	160978	171764
HBP1_chr7_107164003_107207522	1/1	a0001	514	362	83	66	157	14	40	copy fasta	HBP1	chr7	107164003	107207522
HBP1_chr7_107164003_107207522	0/0	a0002	515	5	0	0	5	0	0	copy fasta	HBP1	chr7	107164003	107207522
HBP1_chr7_107164003_107207522	0/0	a0003	514	1	1	0	0	0	0	copy fasta	HBP1	chr7	107164003	107207522
HBQ1_chr16_175459_186179	0/0	a0000	0	1	1	0	0	0	0	copy fasta	HBQ1	chr16	175459	186179
HBQ1_chr16_175459_186179	1/1	a0001	142	373	82	66	174	14	35	copy fasta	HBQ1	chr16	175459	186179
HBQ1_chr16_175459_186179	0/0	a0002	142	7	7	0	0	0	0	copy fasta	HBQ1	chr16	175459	186179
HBQ1_chr16_175459_186179	0/0	a0003	142	2	2	0	0	0	0	copy fasta	HBQ1	chr16	175459	186179
HBQ1_chr16_175459_186179	0/0	a0004	142	1	0	0	0	0	1	copy fasta	HBQ1	chr16	175459	186179
HBS1L_chr6_134955378_135059822	1/1	a0001	684	327	79	58	134	16	38	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	a0002	684	10	8	2	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	a0003	684	2	0	0	2	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	a0004	684	2	0	0	2	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	a0005	684	2	0	0	2	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	a0006	684	1	1	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	a0007	684	1	0	1	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	a0008	684	1	1	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	a0009	684	1	0	1	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBS1L_chr6_134955378_135059822	0/0	a0010	684	1	1	0	0	0	0	copy fasta	HBS1L	chr6	134955378	135059822
HBZ_chr16_147644_159503	0/0	a0000	0	2	0	1	0	0	1	copy fasta	HBZ	chr16	147644	159503
HBZ_chr16_147644_159503	0/0	a0001	142	428	92	79	196	16	45	copy fasta	HBZ	chr16	147644	159503
HBZ_chr16_147644_159503	0/0	a0002	6	2	0	2	0	0	0	copy fasta	HBZ	chr16	147644	159503
HCAR1_chr12_122721076_122735844	1/1	a0001	346	426	90	74	202	18	40	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	a0002	346	3	0	2	0	0	1	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	a0003	346	2	2	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	a0004	346	2	2	0	0	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	a0005	346	1	0	0	1	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	a0006	197	1	0	0	1	0	0	copy fasta	HCAR1	chr12	122721076	122735844
HCAR1_chr12_122721076_122735844	0/0	a0007	346	1	0	0	0	0	1	copy fasta	HCAR1	chr12	122721076	122735844
HCAR2_chr12_122696293_122708357	0/0	a0000	0	5	0	0	5	0	0	copy fasta	HCAR2	chr12	122696293	122708357
HCAR2_chr12_122696293_122708357	1/1	a0001	363	370	80	61	183	11	33	copy fasta	HCAR2	chr12	122696293	122708357
HCAR2_chr12_122696293_122708357	0/0	a0002	363	34	12	9	5	2	6	copy fasta	HCAR2	chr12	122696293	122708357
HCAR2_chr12_122696293_122708357	0/0	a0003	363	16	1	9	0	5	1	copy fasta	HCAR2	chr12	122696293	122708357
HCAR2_chr12_122696293_122708357	0/0	a0004	363	1	1	0	0	0	0	copy fasta	HCAR2	chr12	122696293	122708357
HCAR2_chr12_122696293_122708357	0/0	a0005	363	1	0	1	0	0	0	copy fasta	HCAR2	chr12	122696293	122708357
HCAR2_chr12_122696293_122708357	0/0	a0006	363	1	0	0	1	0	0	copy fasta	HCAR2	chr12	122696293	122708357
HCAR3_chr12_122709756_122721811	0/1	a0001	387	214	51	38	101	12	11	copy fasta	HCAR3	chr12	122709756	122721811