JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HCAR3_chr12_122709756_122721811	0/0	a0002	387	113	19	26	54	4	10	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	1/0	a0003	387	55	0	5	35	2	12	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	a0004	387	23	17	1	0	0	5	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	a0005	387	4	0	2	0	0	2	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	a0006	387	3	0	0	0	0	3	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	a0007	387	3	3	0	0	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	a0008	387	1	0	0	1	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	a0009	272	1	1	0	0	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	a0010	387	1	0	0	1	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	a0011	387	1	0	0	1	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	a0012	387	1	1	0	0	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	a0013	387	1	0	0	0	0	1	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	a0014	387	1	0	0	1	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	a0015	387	1	0	0	1	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCAR3_chr12_122709756_122721811	0/0	a0016	387	1	0	0	1	0	0	copy fasta	HCAR3	chr12	122709756	122721811
HCCS_chrX_11106332_11128086	1/1	a0001	268	236	66	32	105	9	22	copy fasta	HCCS	chrX	11106332	11128086
HCFC1R1_chr16_3017625_3028942	1/1	a0001	138	333	76	63	149	14	29	copy fasta	HCFC1R1	chr16	3017625	3028942
HCFC1R1_chr16_3017625_3028942	0/0	a0002	138	76	20	15	28	2	11	copy fasta	HCFC1R1	chr16	3017625	3028942
HCFC1R1_chr16_3017625_3028942	0/0	a0003	138	1	0	0	1	0	0	copy fasta	HCFC1R1	chr16	3017625	3028942
HCFC1R1_chr16_3017625_3028942	0/0	a0004	126	1	0	0	1	0	0	copy fasta	HCFC1R1	chr16	3017625	3028942
HCFC1R1_chr16_3017625_3028942	0/0	a0005	138	1	0	0	1	0	0	copy fasta	HCFC1R1	chr16	3017625	3028942
HCFC1_chrX_153942557_153976818	0/0	a0001	2035	163	56	24	70	0	13	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	1/1	a0002	2035	81	12	20	28	7	12	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	a0003	265	8	2	0	6	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	a0004	2035	3	0	0	3	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	a0005	1422	2	1	0	1	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	a0006	2035	2	2	0	0	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	a0007	2035	1	1	0	0	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	a0008	2035	1	0	0	1	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	a0009	2035	1	0	0	0	0	1	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	a0010	2035	1	1	0	0	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	a0011	1162	1	1	0	0	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	a0012	902	1	0	0	1	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	a0013	567	1	0	0	1	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	a0014	279	1	0	0	1	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC1_chrX_153942557_153976818	0/0	a0015	170	1	0	0	1	0	0	copy fasta	HCFC1	chrX	153942557	153976818
HCFC2_chr12_104059531_104111524	1/1	a0001	792	375	91	62	168	14	38	copy fasta	HCFC2	chr12	104059531	104111524
HCFC2_chr12_104059531_104111524	0/0	a0002	792	2	1	1	0	0	0	copy fasta	HCFC2	chr12	104059531	104111524
HCFC2_chr12_104059531_104111524	0/0	a0003	792	2	2	0	0	0	0	copy fasta	HCFC2	chr12	104059531	104111524
HCFC2_chr12_104059531_104111524	0/0	a0004	792	2	0	0	0	0	2	copy fasta	HCFC2	chr12	104059531	104111524
HCFC2_chr12_104059531_104111524	0/0	a0005	792	1	0	1	0	0	0	copy fasta	HCFC2	chr12	104059531	104111524
HCK_chr20_32047242_32106856	1/1	a0001	505	285	91	66	81	13	32	copy fasta	HCK	chr20	32047242	32106856
HCK_chr20_32047242_32106856	0/0	a0002	505	2	2	0	0	0	0	copy fasta	HCK	chr20	32047242	32106856
HCK_chr20_32047242_32106856	0/0	a0003	505	1	1	0	0	0	0	copy fasta	HCK	chr20	32047242	32106856
HCK_chr20_32047242_32106856	0/0	a0004	505	1	0	0	1	0	0	copy fasta	HCK	chr20	32047242	32106856
HCK_chr20_32047242_32106856	0/0	a0005	505	1	0	0	0	1	0	copy fasta	HCK	chr20	32047242	32106856
HCLS1_chr3_121626399_121665903	0/0	a0001	486	113	29	16	55	0	13	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	a0002	486	106	36	19	31	4	16	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	a0003	490	100	7	15	66	5	7	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	a0004	486	50	13	14	18	2	3	copy fasta	HCLS1	chr3	121626399	121665903