JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HCLS1_chr3_121626399_121665903	0/1	a0005	486	5	0	0	0	2	2	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	a0006	486	4	3	1	0	0	0	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	a0007	490	3	3	0	0	0	0	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	1/0	a0008	486	3	1	1	0	0	0	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	a0009	486	1	0	0	1	0	0	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	a0010	486	1	0	0	1	0	0	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	a0011	490	1	0	0	1	0	0	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	a0012	490	1	0	0	0	1	0	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	a0013	486	1	0	0	1	0	0	copy fasta	HCLS1	chr3	121626399	121665903
HCLS1_chr3_121626399_121665903	0/0	a0014	490	1	0	0	0	0	1	copy fasta	HCLS1	chr3	121626399	121665903
HCN1_chr5_45249948_45701380	1/1	a0001	890	219	52	47	92	8	18	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	a0002	887	5	4	1	0	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN1_chr5_45249948_45701380	0/0	a0003	890	2	2	0	0	0	0	copy fasta	HCN1	chr5	45249948	45701380
HCN2_chr19_584881_622159	1/0	a0001	889	265	76	47	106	3	32	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/1	a0002	889	116	14	29	51	8	13	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	a0003	889	4	4	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	a0004	889	3	1	2	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	a0005	889	3	3	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	a0006	889	2	0	2	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	a0007	892	2	0	0	1	0	1	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	a0008	896	2	0	2	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	a0009	892	1	0	0	1	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	a0010	889	1	0	0	0	0	1	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	a0011	889	1	0	0	1	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	a0012	889	1	0	0	1	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	a0013	889	1	0	0	1	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	a0014	889	1	0	0	0	0	1	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	a0015	889	1	0	0	0	1	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	a0016	889	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	a0017	902	1	0	1	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	a0018	889	1	0	1	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN2_chr19_584881_622159	0/0	a0019	889	1	1	0	0	0	0	copy fasta	HCN2	chr19	584881	622159
HCN3_chr1_155272463_155294848	0/1	a0001	774	319	82	53	129	13	41	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	a0002	774	3	3	0	0	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	a0003	774	3	2	1	0	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	a0004	774	2	0	2	0	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	a0005	774	2	2	0	0	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	a0006	774	1	0	0	1	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	a0007	774	1	0	0	1	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	a0008	774	1	1	0	0	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	a0009	774	1	0	0	0	1	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	a0010	774	1	0	0	0	0	1	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	a0011	774	1	0	1	0	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	a0012	774	1	0	0	1	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	a0013	774	1	0	0	1	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	a0014	774	1	0	0	1	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN3_chr1_155272463_155294848	0/0	a0015	774	1	0	1	0	0	0	copy fasta	HCN3	chr1	155272463	155294848
HCN4_chr15_73314859_73373958	1/1	a0001	1203	329	88	64	125	11	39	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	a0002	1203	5	0	3	0	0	2	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	a0003	1203	2	0	1	0	0	1	copy fasta	HCN4	chr15	73314859	73373958