JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HCN4_chr15_73314859_73373958	0/0	a0004	1203	2	2	0	0	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	a0005	1203	2	0	1	0	1	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	a0006	1203	1	1	0	0	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	a0007	1203	1	0	1	0	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	a0008	1203	1	1	0	0	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCN4_chr15_73314859_73373958	0/0	a0009	1203	1	0	0	1	0	0	copy fasta	HCN4	chr15	73314859	73373958
HCRTR1_chr1_31612689_31632613	1/0	a0001	425	173	42	26	85	4	15	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/1	a0002	425	135	18	30	53	7	26	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	a0003	425	6	5	1	0	0	0	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	a0004	425	6	5	1	0	0	0	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	a0005	425	5	4	1	0	0	0	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	a0006	425	2	2	0	0	0	0	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	a0007	425	1	0	0	0	1	0	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	a0008	425	1	0	1	0	0	0	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	a0009	425	1	1	0	0	0	0	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	a0010	425	1	0	0	1	0	0	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	a0011	425	1	0	0	0	0	1	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	a0012	425	1	0	0	1	0	0	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR1_chr1_31612689_31632613	0/0	a0013	425	1	1	0	0	0	0	copy fasta	HCRTR1	chr1	31612689	31632613
HCRTR2_chr6_55169515_55287617	0/0	a0001	444	325	75	66	142	11	31	copy fasta	HCRTR2	chr6	55169515	55287617
HCRTR2_chr6_55169515_55287617	1/1	a0002	444	36	8	6	7	5	8	copy fasta	HCRTR2	chr6	55169515	55287617
HCRTR2_chr6_55169515_55287617	0/0	a0003	444	2	2	0	0	0	0	copy fasta	HCRTR2	chr6	55169515	55287617
HCRTR2_chr6_55169515_55287617	0/0	a0004	444	1	0	0	0	0	1	copy fasta	HCRTR2	chr6	55169515	55287617
HCRTR2_chr6_55169515_55287617	0/0	a0005	444	1	1	0	0	0	0	copy fasta	HCRTR2	chr6	55169515	55287617
HCRTR2_chr6_55169515_55287617	0/0	a0006	444	1	0	1	0	0	0	copy fasta	HCRTR2	chr6	55169515	55287617
HCRTR2_chr6_55169515_55287617	0/0	a0007	444	1	0	0	1	0	0	copy fasta	HCRTR2	chr6	55169515	55287617
HCRTR2_chr6_55169515_55287617	0/0	a0008	444	1	0	1	0	0	0	copy fasta	HCRTR2	chr6	55169515	55287617
HCRT_chr17_42179060_42190452	1/1	a0001	131	376	93	62	164	16	39	copy fasta	HCRT	chr17	42179060	42190452
HCRT_chr17_42179060_42190452	0/0	a0002	131	1	1	0	0	0	0	copy fasta	HCRT	chr17	42179060	42190452
HCRT_chr17_42179060_42190452	0/0	a0003	131	1	0	0	0	0	1	copy fasta	HCRT	chr17	42179060	42190452
HCST_chr19_35897529_35909377	1/1	a0001	93	408	92	80	172	16	46	copy fasta	HCST	chr19	35897529	35909377
HDAC10_chr22_50240183_50256265	1/1	a0001	669	393	87	75	174	13	42	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	a0002	669	31	0	3	25	0	3	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	a0003	669	6	6	0	0	0	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	a0004	669	4	0	2	0	2	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	a0005	669	2	2	0	0	0	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	a0006	669	2	0	1	0	1	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	a0007	669	1	0	0	1	0	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	a0008	669	1	0	1	0	0	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	a0009	661	1	0	0	1	0	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	a0010	669	1	0	0	1	0	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	a0011	669	1	0	0	1	0	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	a0012	669	1	1	0	0	0	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	a0013	669	1	0	0	1	0	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	a0014	669	1	1	0	0	0	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	a0015	669	1	0	0	0	0	1	copy fasta	HDAC10	chr22	50240183	50256265
HDAC10_chr22_50240183_50256265	0/0	a0016	669	1	1	0	0	0	0	copy fasta	HDAC10	chr22	50240183	50256265
HDAC11_chr3_13475306_13511416	1/1	a0001	347	419	99	70	190	16	42	copy fasta	HDAC11	chr3	13475306	13511416
HDAC11_chr3_13475306_13511416	0/0	a0002	347	1	1	0	0	0	0	copy fasta	HDAC11	chr3	13475306	13511416
HDAC1_chr1_32287083_32338626	1/1	a0001	482	145	65	28	28	6	16	copy fasta	HDAC1	chr1	32287083	32338626