JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HDAC1_chr1_32287083_32338626	0/0	a0002	482	1	1	0	0	0	0	copy fasta	HDAC1	chr1	32287083	32338626
HDAC2_chr6_113928028_113976148	1/1	a0001	488	402	80	80	194	12	34	copy fasta	HDAC2	chr6	113928028	113976148
HDAC3_chr5_141615881_141641849	1/1	a0001	428	381	86	70	165	14	44	copy fasta	HDAC3	chr5	141615881	141641849
HDAC3_chr5_141615881_141641849	0/0	a0002	428	6	6	0	0	0	0	copy fasta	HDAC3	chr5	141615881	141641849
HDAC3_chr5_141615881_141641849	0/0	a0003	428	1	0	0	1	0	0	copy fasta	HDAC3	chr5	141615881	141641849
HDAC4_chr2_239043168_239406020	1/1	a0001	1089	229	80	45	58	12	32	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	a0002	1089	3	0	0	3	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	a0003	1089	2	2	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	a0004	1089	2	0	2	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	a0005	1089	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	a0006	1089	1	0	1	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	a0007	1089	1	1	0	0	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	a0008	1089	1	0	0	0	0	1	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	a0009	1089	1	0	0	1	0	0	copy fasta	HDAC4	chr2	239043168	239406020
HDAC4_chr2_239043168_239406020	0/0	a0010	1089	1	0	0	0	0	1	copy fasta	HDAC4	chr2	239043168	239406020
HDAC5_chr17_44071753_44128641	0/1	a0001	1122	206	46	44	88	8	19	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	1/0	a0002	1122	80	38	13	23	2	3	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	a0003	1122	4	3	1	0	0	0	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	a0004	1122	2	0	0	2	0	0	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	a0005	1122	1	1	0	0	0	0	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	a0006	1122	1	0	1	0	0	0	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	a0007	1122	1	0	1	0	0	0	copy fasta	HDAC5	chr17	44071753	44128641
HDAC5_chr17_44071753_44128641	0/0	a0008	1122	1	0	0	1	0	0	copy fasta	HDAC5	chr17	44071753	44128641
HDAC6_chrX_48797067_48829976	1/1	a0001	1215	253	70	43	103	11	24	copy fasta	HDAC6	chrX	48797067	48829976
HDAC6_chrX_48797067_48829976	0/0	a0002	1215	6	0	6	0	0	0	copy fasta	HDAC6	chrX	48797067	48829976
HDAC6_chrX_48797067_48829976	0/0	a0003	1215	1	0	1	0	0	0	copy fasta	HDAC6	chrX	48797067	48829976
HDAC6_chrX_48797067_48829976	0/0	a0004	1215	1	1	0	0	0	0	copy fasta	HDAC6	chrX	48797067	48829976
HDAC6_chrX_48797067_48829976	0/0	a0005	1215	1	0	0	1	0	0	copy fasta	HDAC6	chrX	48797067	48829976
HDAC6_chrX_48797067_48829976	0/0	a0006	836	1	0	0	1	0	0	copy fasta	HDAC6	chrX	48797067	48829976
HDAC6_chrX_48797067_48829976	0/0	a0007	1215	1	0	0	0	0	1	copy fasta	HDAC6	chrX	48797067	48829976
HDAC6_chrX_48797067_48829976	0/0	a0008	1215	1	1	0	0	0	0	copy fasta	HDAC6	chrX	48797067	48829976
HDAC6_chrX_48797067_48829976	0/0	a0009	1215	1	0	0	0	0	1	copy fasta	HDAC6	chrX	48797067	48829976
HDAC6_chrX_48797067_48829976	0/0	a0010	765	1	0	1	0	0	0	copy fasta	HDAC6	chrX	48797067	48829976
HDAC6_chrX_48797067_48829976	0/0	a0011	653	1	0	0	1	0	0	copy fasta	HDAC6	chrX	48797067	48829976
HDAC6_chrX_48797067_48829976	0/0	a0012	1215	1	0	1	0	0	0	copy fasta	HDAC6	chrX	48797067	48829976
HDAC7_chr12_47777722_47824903	1/1	a0001	991	364	89	75	137	17	44	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	a0002	991	6	5	1	0	0	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	a0003	991	2	1	1	0	0	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	a0004	991	2	2	0	0	0	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	a0005	991	1	0	0	0	1	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	a0006	991	1	0	0	0	0	1	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	a0007	991	1	0	0	0	0	1	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	a0008	991	1	1	0	0	0	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	a0009	991	1	0	1	0	0	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC7_chr12_47777722_47824903	0/0	a0010	991	1	0	0	1	0	0	copy fasta	HDAC7	chr12	47777722	47824903
HDAC8_chrX_72324516_72577843	1/1	a0001	377	208	70	29	78	5	24	copy fasta	HDAC8	chrX	72324516	72577843
HDAC9_chr7_18490749_19007416	1/1	a0001	1069	156	76	22	38	0	18	copy fasta	HDAC9	chr7	18490749	19007416
HDC_chr15_50236947_50270726	1/1	a0001	662	362	78	64	155	16	47	copy fasta	HDC	chr15	50236947	50270726
HDC_chr15_50236947_50270726	0/0	a0002	662	30	10	4	14	2	0	copy fasta	HDC	chr15	50236947	50270726
HDC_chr15_50236947_50270726	0/0	a0003	662	18	0	8	9	0	1	copy fasta	HDC	chr15	50236947	50270726