Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ALDH3A1_chr17_19732989_19753298	0/0	a0007	453	2	2	0	0	0	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	a0008	453	1	1	0	0	0	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	a0009	453	1	0	0	1	0	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	a0010	453	1	0	0	1	0	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	a0011	453	1	0	0	0	1	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	a0012	453	1	1	0	0	0	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A1_chr17_19732989_19753298	0/0	a0013	453	1	1	0	0	0	0	copy fasta	ALDH3A1	chr17	19732989	19753298
ALDH3A2_chr17_19643751_19682596	1/1	a0001	485	364	74	71	166	16	35	copy fasta	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	a0002	485	1	0	0	0	0	1	copy fasta	ALDH3A2	chr17	19643751	19682596
ALDH3A2_chr17_19643751_19682596	0/0	a0003	485	1	0	1	0	0	0	copy fasta	ALDH3A2	chr17	19643751	19682596
ALDH3B1_chr11_68005327_68034276	1/1	a0001	468	362	86	62	152	16	44	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	a0002	468	6	0	0	6	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	a0003	468	3	3	0	0	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	a0004	9	1	1	0	0	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	a0005	468	1	1	0	0	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B1_chr11_68005327_68034276	0/0	a0006	468	1	1	0	0	0	0	copy fasta	ALDH3B1	chr11	68005327	68034276
ALDH3B2_chr11_67657155_67679623	0/1	a0001	385	272	45	51	120	13	42	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	a0002	385	36	11	9	13	2	1	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	a0003	385	16	8	0	8	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	a0004	385	15	14	1	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	a0005	385	14	0	0	14	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	a0006	385	10	9	1	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	a0007	385	6	0	0	6	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	a0008	385	4	3	1	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	a0009	385	3	0	0	3	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	a0010	385	2	2	0	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	a0011	385	2	2	0	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	a0012	162	1	1	0	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	a0013	385	1	0	1	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	a0014	385	1	0	1	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	a0015	385	1	0	1	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	a0016	385	1	0	0	1	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	a0017	385	1	0	0	0	1	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	a0018	385	1	1	0	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	1/0	a0019	385	1	0	0	0	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	a0020	385	1	0	0	0	0	1	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH3B2_chr11_67657155_67679623	0/0	a0021	385	1	0	0	1	0	0	copy fasta	ALDH3B2	chr11	67657155	67679623
ALDH4A1_chr1_18866430_18907555	1/1	a0001	563	356	70	63	166	15	40	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	a0002	563	14	10	4	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	a0003	563	11	2	7	0	1	1	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	a0004	563	6	0	5	0	1	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	a0005	563	4	4	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	a0006	563	3	0	0	0	0	3	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	a0007	563	2	2	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	a0008	563	1	0	0	0	0	1	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	a0009	563	1	0	1	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	a0010	563	1	1	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	a0011	563	1	1	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	a0012	563	1	0	0	1	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	a0013	563	1	0	0	0	1	0	copy fasta	ALDH4A1	chr1	18866430	18907555