JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HDC_chr15_50236947_50270726	0/0	a0004	662	7	6	1	0	0	0	copy fasta	HDC	chr15	50236947	50270726
HDC_chr15_50236947_50270726	0/0	a0005	662	1	0	1	0	0	0	copy fasta	HDC	chr15	50236947	50270726
HDDC2_chr6_125270350_125306967	1/1	a0001	204	371	92	65	170	12	30	copy fasta	HDDC2	chr6	125270350	125306967
HDDC2_chr6_125270350_125306967	0/0	a0002	204	1	1	0	0	0	0	copy fasta	HDDC2	chr6	125270350	125306967
HDDC2_chr6_125270350_125306967	0/0	a0003	204	1	0	1	0	0	0	copy fasta	HDDC2	chr6	125270350	125306967
HDDC2_chr6_125270350_125306967	0/0	a0004	204	1	1	0	0	0	0	copy fasta	HDDC2	chr6	125270350	125306967
HDDC3_chr15_90924968_90937549	1/1	a0001	179	391	94	72	170	12	41	copy fasta	HDDC3	chr15	90924968	90937549
HDDC3_chr15_90924968_90937549	0/0	a0002	180	3	0	0	0	0	3	copy fasta	HDDC3	chr15	90924968	90937549
HDDC3_chr15_90924968_90937549	0/0	a0003	179	2	0	0	0	2	0	copy fasta	HDDC3	chr15	90924968	90937549
HDDC3_chr15_90924968_90937549	0/0	a0004	179	1	1	0	0	0	0	copy fasta	HDDC3	chr15	90924968	90937549
HDDC3_chr15_90924968_90937549	0/0	a0005	179	1	0	1	0	0	0	copy fasta	HDDC3	chr15	90924968	90937549
HDDC3_chr15_90924968_90937549	0/0	a0006	179	1	1	0	0	0	0	copy fasta	HDDC3	chr15	90924968	90937549
HDDC3_chr15_90924968_90937549	0/0	a0007	179	1	0	1	0	0	0	copy fasta	HDDC3	chr15	90924968	90937549
HDGFL1_chr6_22564566_22576666	1/1	a0001	251	336	85	60	143	16	30	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	a0002	251	75	4	13	48	1	9	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	a0003	252	13	1	5	3	1	3	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	a0004	257	3	2	1	0	0	0	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	a0005	251	2	0	0	2	0	0	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	a0006	251	1	0	1	0	0	0	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	a0007	257	1	1	0	0	0	0	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL1_chr6_22564566_22576666	0/0	a0008	251	1	1	0	0	0	0	copy fasta	HDGFL1	chr6	22564566	22576666
HDGFL2_chr19_4467297_4507207	1/1	a0001	671	332	82	72	113	18	45	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	a0002	671	7	0	0	7	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	a0003	378	7	2	1	3	0	1	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	a0004	671	3	3	0	0	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	a0005	671	2	2	0	0	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	a0006	671	1	0	0	1	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	a0007	671	1	0	1	0	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	a0008	671	1	1	0	0	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	a0009	671	1	0	0	1	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	a0010	671	1	1	0	0	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	a0011	671	1	1	0	0	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL2_chr19_4467297_4507207	0/0	a0012	671	1	0	0	1	0	0	copy fasta	HDGFL2	chr19	4467297	4507207
HDGFL3_chr15_83122753_83212823	1/1	a0001	203	246	94	52	70	6	22	copy fasta	HDGFL3	chr15	83122753	83212823
HDGF_chr1_156737109_156756675	1/1	a0001	240	270	83	61	79	13	32	copy fasta	HDGF	chr1	156737109	156756675
HDGF_chr1_156737109_156756675	0/0	a0002	240	68	8	15	29	3	13	copy fasta	HDGF	chr1	156737109	156756675
HDGF_chr1_156737109_156756675	0/0	a0003	240	3	1	0	1	0	1	copy fasta	HDGF	chr1	156737109	156756675
HDGF_chr1_156737109_156756675	0/0	a0004	240	1	0	0	1	0	0	copy fasta	HDGF	chr1	156737109	156756675
HDHD2_chr18_47102410_47155500	1/1	a0001	259	359	68	70	174	14	31	copy fasta	HDHD2	chr18	47102410	47155500
HDHD2_chr18_47102410_47155500	0/0	a0002	259	6	6	0	0	0	0	copy fasta	HDHD2	chr18	47102410	47155500
HDHD2_chr18_47102410_47155500	0/0	a0003	259	1	0	0	0	0	1	copy fasta	HDHD2	chr18	47102410	47155500
HDHD3_chr9_113368422_113381986	0/1	a0001	251	249	52	56	94	13	33	copy fasta	HDHD3	chr9	113368422	113381986
HDHD3_chr9_113368422_113381986	1/0	a0002	251	201	45	30	112	5	8	copy fasta	HDHD3	chr9	113368422	113381986
HDHD3_chr9_113368422_113381986	0/0	a0003	251	11	0	0	11	0	0	copy fasta	HDHD3	chr9	113368422	113381986
HDHD3_chr9_113368422_113381986	0/0	a0004	251	1	0	0	0	0	1	copy fasta	HDHD3	chr9	113368422	113381986
HDHD3_chr9_113368422_113381986	0/0	a0005	251	1	1	0	0	0	0	copy fasta	HDHD3	chr9	113368422	113381986
HDHD3_chr9_113368422_113381986	0/0	a0006	251	1	0	0	1	0	0	copy fasta	HDHD3	chr9	113368422	113381986
HDHD5_chr22_17132520_17164277	1/0	a0001	423	326	50	51	180	9	35	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/1	a0002	423	71	30	17	6	6	11	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/0	a0003	423	10	9	1	0	0	0	copy fasta	HDHD5	chr22	17132520	17164277