JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HDHD5_chr22_17132520_17164277	0/0	a0004	423	6	0	4	0	1	1	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/0	a0005	423	3	3	0	0	0	0	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/0	a0006	347	1	1	0	0	0	0	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/0	a0007	423	1	1	0	0	0	0	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/0	a0008	423	1	0	1	0	0	0	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/0	a0009	423	1	0	0	1	0	0	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/0	a0010	423	1	0	0	0	0	1	copy fasta	HDHD5	chr22	17132520	17164277
HDHD5_chr22_17132520_17164277	0/0	a0011	423	1	0	0	1	0	0	copy fasta	HDHD5	chr22	17132520	17164277
HDLBP_chr2_241222291_241320672	1/1	a0001	1268	312	66	50	141	11	42	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	a0002	1268	37	14	18	0	3	2	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	a0003	1268	2	2	0	0	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	a0004	1268	2	2	0	0	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDLBP_chr2_241222291_241320672	0/0	a0005	1268	1	0	0	1	0	0	copy fasta	HDLBP	chr2	241222291	241320672
HDX_chrX_84312878_84507453	1/1	a0001	690	233	53	40	112	3	23	copy fasta	HDX	chrX	84312878	84507453
HDX_chrX_84312878_84507453	0/0	a0002	690	20	0	3	11	4	2	copy fasta	HDX	chrX	84312878	84507453
HDX_chrX_84312878_84507453	0/0	a0003	690	11	9	2	0	0	0	copy fasta	HDX	chrX	84312878	84507453
HDX_chrX_84312878_84507453	0/0	a0004	690	2	2	0	0	0	0	copy fasta	HDX	chrX	84312878	84507453
HDX_chrX_84312878_84507453	0/0	a0005	690	1	0	0	1	0	0	copy fasta	HDX	chrX	84312878	84507453
HDX_chrX_84312878_84507453	0/0	a0006	495	1	0	0	1	0	0	copy fasta	HDX	chrX	84312878	84507453
HDX_chrX_84312878_84507453	0/0	a0007	690	1	0	0	0	0	1	copy fasta	HDX	chrX	84312878	84507453
HEATR1_chr1_236544005_236609516	0/0	a0001	2144	101	0	19	65	4	13	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	1/0	a0002	2144	91	25	9	43	2	11	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0003	2144	33	0	7	24	0	2	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0004	2144	26	2	8	8	1	7	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0005	2144	20	15	3	0	1	1	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0006	2144	18	0	7	10	0	1	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0007	2144	17	14	2	0	0	1	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0008	2144	10	0	0	9	0	1	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0009	2144	9	8	1	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0010	2144	6	0	0	6	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0011	2144	5	4	1	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0012	2144	4	4	0	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0013	2144	4	0	0	4	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0014	2144	3	3	0	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0015	2144	3	3	0	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0016	2144	2	2	0	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0017	2144	2	0	0	0	0	2	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0018	2144	2	0	0	0	0	2	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0019	2144	2	0	0	2	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0020	2144	2	2	0	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0021	2144	2	0	0	2	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0022	2144	2	0	0	2	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0023	2144	2	1	0	0	1	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0024	2144	2	0	0	2	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0025	2144	1	0	0	1	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0026	2144	1	0	0	0	0	1	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0027	2144	1	0	0	0	0	1	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0028	2144	1	1	0	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0029	2144	1	0	0	1	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0030	2144	1	0	0	0	0	1	copy fasta	HEATR1	chr1	236544005	236609516