JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HEATR1_chr1_236544005_236609516	0/0	a0031	2144	1	0	0	0	0	1	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0032	2144	1	1	0	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0033	2144	1	0	0	0	0	1	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0034	2144	1	0	1	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0035	2144	1	0	1	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0036	2144	1	0	0	0	1	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/1	a0037	2144	1	0	0	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0038	2144	1	1	0	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0039	2144	1	0	0	1	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0040	2144	1	1	0	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0041	2144	1	0	0	1	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0042	2144	1	1	0	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0043	2144	1	0	1	0	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR1_chr1_236544005_236609516	0/0	a0044	2144	1	0	0	1	0	0	copy fasta	HEATR1	chr1	236544005	236609516
HEATR3_chr16_50060970_50112272	1/1	a0001	680	281	63	50	124	10	32	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	a0002	680	17	15	2	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	a0003	680	5	5	0	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	a0004	680	3	3	0	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	a0005	680	2	1	1	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	a0006	680	2	0	0	2	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	a0007	680	1	0	0	1	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	a0008	680	1	0	1	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	a0009	680	1	1	0	0	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR3_chr16_50060970_50112272	0/0	a0010	680	1	0	0	1	0	0	copy fasta	HEATR3	chr16	50060970	50112272
HEATR4_chr14_73473484_73563947	1/1	a0001	1026	327	66	62	146	10	41	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	a0002	1026	5	5	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	a0003	1026	5	4	1	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	a0004	1026	4	0	3	0	1	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	a0005	1026	3	3	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	a0006	1026	3	1	0	0	1	1	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	a0007	784	2	2	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	a0008	1026	2	2	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	a0009	1026	2	0	2	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	a0010	1025	2	1	0	1	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	a0011	1026	2	0	0	2	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	a0012	1026	1	1	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	a0013	1026	1	1	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	a0014	1026	1	0	0	1	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	a0015	1026	1	1	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	a0016	1026	1	0	0	1	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	a0017	1026	1	0	0	1	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	a0018	1026	1	1	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	a0019	1026	1	1	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	a0020	1026	1	1	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	a0021	1026	1	1	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR4_chr14_73473484_73563947	0/0	a0022	1025	1	1	0	0	0	0	copy fasta	HEATR4	chr14	73473484	73563947
HEATR5A_chr14_31286788_31425550	0/0	a0001	2046	97	12	23	40	4	18	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	a0002	2046	87	6	16	48	4	13	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	a0003	2046	50	7	9	33	0	1	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	a0004	2046	28	7	7	13	0	1	copy fasta	HEATR5A	chr14	31286788	31425550