JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HEATR5A_chr14_31286788_31425550	0/0	a0005	2046	15	14	1	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	a0006	2046	12	0	0	11	0	1	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	a0007	2046	12	5	0	7	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	a0008	2046	6	6	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	a0009	2046	6	6	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	a0010	2046	5	2	1	2	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	a0011	2046	4	4	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	a0012	2046	4	4	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	a0013	2046	3	3	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	a0014	2046	3	3	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	a0015	2046	3	2	1	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	a0016	2046	3	0	0	2	0	1	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	a0017	2046	2	0	1	0	0	1	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	a0018	2046	2	2	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	a0019	2046	1	1	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	a0020	2046	1	0	0	1	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	a0021	2046	1	1	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	a0022	2046	1	1	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	a0023	2046	1	0	0	1	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	a0024	2046	1	0	0	1	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	a0025	2046	1	1	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	a0026	2046	1	1	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	a0027	2046	1	0	0	1	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	a0028	2046	1	0	1	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	a0029	2046	1	1	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5A_chr14_31286788_31425550	0/0	a0030	2046	1	1	0	0	0	0	copy fasta	HEATR5A	chr14	31286788	31425550
HEATR5B_chr2_36975895_37089372	1/1	a0001	2071	249	50	52	106	15	24	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	a0002	2071	45	20	3	16	1	5	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	a0003	2071	5	0	0	5	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	a0004	2071	4	3	1	0	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	a0005	2071	3	0	0	3	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	a0006	2071	3	3	0	0	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	a0007	2071	1	0	0	0	0	1	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	a0008	2071	1	0	0	1	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	a0009	2071	1	1	0	0	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	a0010	2071	1	0	0	1	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR5B_chr2_36975895_37089372	0/0	a0011	2071	1	1	0	0	0	0	copy fasta	HEATR5B	chr2	36975895	37089372
HEATR6_chr17_60036008_60083921	1/1	a0001	1181	191	59	44	68	6	12	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	a0002	1181	33	13	5	12	2	1	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	a0003	1181	7	6	1	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	a0004	1181	5	3	1	0	0	1	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	a0005	1181	4	4	0	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	a0006	1181	2	2	0	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	a0007	1181	1	0	1	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	a0008	1181	1	0	1	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	a0009	1181	1	1	0	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	a0010	1181	1	1	0	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	a0011	1181	1	1	0	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	a0012	1181	1	0	0	1	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR6_chr17_60036008_60083921	0/0	a0013	1181	1	0	0	1	0	0	copy fasta	HEATR6	chr17	60036008	60083921