JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HEATR6_chr17_60036008_60083921	0/0	a0014	1181	1	0	1	0	0	0	copy fasta	HEATR6	chr17	60036008	60083921
HEATR9_chr17_35849955_35873891	0/1	a0001	570	260	57	47	115	8	32	copy fasta	HEATR9	chr17	35849955	35873891
HEATR9_chr17_35849955_35873891	0/0	a0002	570	66	7	16	38	2	3	copy fasta	HEATR9	chr17	35849955	35873891
HEATR9_chr17_35849955_35873891	0/0	a0003	570	27	1	2	23	0	1	copy fasta	HEATR9	chr17	35849955	35873891
HEATR9_chr17_35849955_35873891	0/0	a0004	570	15	12	3	0	0	0	copy fasta	HEATR9	chr17	35849955	35873891
HEATR9_chr17_35849955_35873891	0/0	a0005	570	3	0	0	3	0	0	copy fasta	HEATR9	chr17	35849955	35873891
HEATR9_chr17_35849955_35873891	0/0	a0006	570	2	2	0	0	0	0	copy fasta	HEATR9	chr17	35849955	35873891
HEATR9_chr17_35849955_35873891	0/0	a0007	570	1	0	0	1	0	0	copy fasta	HEATR9	chr17	35849955	35873891
HEATR9_chr17_35849955_35873891	0/0	a0008	570	1	1	0	0	0	0	copy fasta	HEATR9	chr17	35849955	35873891
HEATR9_chr17_35849955_35873891	0/0	a0009	570	1	1	0	0	0	0	copy fasta	HEATR9	chr17	35849955	35873891
HEATR9_chr17_35849955_35873891	0/0	a0010	570	1	0	0	0	0	1	copy fasta	HEATR9	chr17	35849955	35873891
HEATR9_chr17_35849955_35873891	0/0	a0011	570	1	1	0	0	0	0	copy fasta	HEATR9	chr17	35849955	35873891
HEATR9_chr17_35849955_35873891	0/0	a0012	570	1	0	0	0	0	1	copy fasta	HEATR9	chr17	35849955	35873891
HEBP1_chr12_12969870_13005265	1/1	a0001	189	389	78	70	180	16	43	copy fasta	HEBP1	chr12	12969870	13005265
HEBP1_chr12_12969870_13005265	0/0	a0002	189	4	1	2	1	0	0	copy fasta	HEBP1	chr12	12969870	13005265
HEBP1_chr12_12969870_13005265	0/0	a0003	189	1	0	0	1	0	0	copy fasta	HEBP1	chr12	12969870	13005265
HEBP1_chr12_12969870_13005265	0/0	a0004	189	1	1	0	0	0	0	copy fasta	HEBP1	chr12	12969870	13005265
HEBP1_chr12_12969870_13005265	0/0	a0005	189	1	0	0	0	0	1	copy fasta	HEBP1	chr12	12969870	13005265
HEBP2_chr6_138399223_138427197	1/1	a0001	205	307	93	59	108	12	33	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	a0002	205	3	0	0	3	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	a0003	205	1	0	1	0	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	a0004	205	1	0	1	0	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	a0005	205	1	0	0	1	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	a0006	205	1	0	0	0	0	1	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	a0007	205	1	1	0	0	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HEBP2_chr6_138399223_138427197	0/0	a0008	205	1	0	1	0	0	0	copy fasta	HEBP2	chr6	138399223	138427197
HECA_chr6_139130080_139185802	1/1	a0001	543	309	83	57	121	10	36	copy fasta	HECA	chr6	139130080	139185802
HECA_chr6_139130080_139185802	0/0	a0002	537	5	1	1	3	0	0	copy fasta	HECA	chr6	139130080	139185802
HECTD1_chr14_31095117_31212793	1/1	a0001	2610	311	81	55	127	12	34	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	a0002	2610	19	0	6	7	2	4	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	a0003	2610	3	3	0	0	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	a0004	2610	2	0	0	0	0	2	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	a0005	2610	2	0	0	2	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	a0006	2610	1	1	0	0	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	a0007	2610	1	1	0	0	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	a0008	2610	1	0	1	0	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	a0009	2610	1	0	0	1	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD1_chr14_31095117_31212793	0/0	a0010	2610	1	0	0	1	0	0	copy fasta	HECTD1	chr14	31095117	31212793
HECTD2_chr10_91405344_91519820	0/0	a0001	776	14	10	4	0	0	0	copy fasta	HECTD2	chr10	91405344	91519820
HECTD2_chr10_91405344_91519820	1/0	a0002	776	1	0	0	0	0	0	copy fasta	HECTD2	chr10	91405344	91519820
HECTD3_chr1_44997548_45016324	1/1	a0001	861	378	92	70	159	16	39	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	a0002	861	6	0	0	6	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	a0003	861	3	0	0	3	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	a0004	861	1	0	1	0	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	a0005	574	1	0	1	0	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	a0006	861	1	0	0	1	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	a0007	861	1	0	0	0	0	1	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	a0008	861	1	0	0	1	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	a0009	861	1	1	0	0	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	a0010	861	1	1	0	0	0	0	copy fasta	HECTD3	chr1	44997548	45016324