JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HECTD3_chr1_44997548_45016324	0/0	a0011	861	1	0	0	1	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD3_chr1_44997548_45016324	0/0	a0012	861	1	0	0	1	0	0	copy fasta	HECTD3	chr1	44997548	45016324
HECTD4_chr12_112155195_112387431	1/1	a0001	4418	234	67	39	108	4	14	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	a0002	3245	21	5	3	11	0	2	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	a0003	4418	2	0	0	2	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	a0004	4418	1	1	0	0	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	a0005	4418	1	0	0	0	0	1	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	a0006	4418	1	0	1	0	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	a0007	4418	1	0	0	0	0	1	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	a0008	3245	1	0	0	1	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	a0009	4418	1	0	1	0	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	a0010	4418	1	0	0	1	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	a0011	4418	1	0	0	1	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	a0012	4418	1	1	0	0	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	a0013	4418	1	0	0	1	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	a0014	4418	1	1	0	0	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	a0015	4418	1	0	0	1	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECTD4_chr12_112155195_112387431	0/0	a0016	4418	1	1	0	0	0	0	copy fasta	HECTD4	chr12	112155195	112387431
HECW1_chr7_43107647_43571001	1/0	a0001	1606	154	53	27	50	5	18	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/1	a0002	1606	16	1	8	1	3	2	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	a0003	1606	6	6	0	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	a0004	1606	3	3	0	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	a0005	1606	1	0	0	1	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	a0006	1606	1	1	0	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW1_chr7_43107647_43571001	0/0	a0007	1606	1	0	1	0	0	0	copy fasta	HECW1	chr7	43107647	43571001
HECW2_chr2_196189072_196598554	1/1	a0001	1572	105	66	16	0	4	17	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	a0002	1572	3	3	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	a0003	1572	1	0	0	0	0	1	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	a0004	1572	1	1	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	a0005	1572	1	1	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HECW2_chr2_196189072_196598554	0/0	a0006	1572	1	1	0	0	0	0	copy fasta	HECW2	chr2	196189072	196598554
HEG1_chr3_124960710_125060997	0/1	a0001	1381	106	8	21	52	3	21	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0002	1387	34	2	1	28	0	3	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	1/0	a0003	1381	29	6	2	16	1	3	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0004	1387	25	8	2	13	0	2	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0005	1387	17	5	4	8	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0006	1381	16	4	3	7	1	1	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0007	1381	13	5	3	3	0	2	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0008	1386	11	1	2	8	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0009	1381	10	2	5	3	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0010	1380	8	0	2	6	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0011	1381	7	0	5	0	0	2	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0012	1381	6	1	4	0	1	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0013	1387	5	4	0	1	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0014	1382	4	0	0	4	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0015	1387	4	0	2	2	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0016	1382	3	0	2	0	1	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0017	1381	3	0	0	3	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0018	1381	3	3	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0019	1381	3	3	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997