JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HEG1_chr3_124960710_125060997	0/0	a0020	1381	3	1	2	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0021	1381	3	3	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0022	1381	3	3	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0023	1380	3	0	0	3	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0024	1388	2	0	1	0	1	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0025	1382	2	1	0	0	1	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0026	1388	2	0	2	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0027	1381	2	2	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0028	1381	2	0	0	2	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0029	1381	2	2	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0030	1380	2	2	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0031	1388	1	0	0	1	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0032	1388	1	0	1	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0033	1381	1	0	0	0	0	1	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0034	1381	1	1	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0035	1381	1	1	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0036	1381	1	1	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0037	1387	1	0	0	1	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0038	1381	1	1	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0039	1387	1	0	0	0	1	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0040	1387	1	0	0	0	0	1	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0041	1381	1	1	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0042	1381	1	1	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0043	1381	1	0	1	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0044	1387	1	0	0	1	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0045	1387	1	1	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0046	1387	1	1	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0047	1381	1	1	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0048	1387	1	0	0	1	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0049	1381	1	1	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0050	1381	1	1	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0051	1381	1	1	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0052	1387	1	0	0	1	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0053	1381	1	0	0	1	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0054	1381	1	1	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0055	1381	1	0	1	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0056	1387	1	1	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0057	1380	1	1	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0058	1380	1	0	0	1	0	0	copy fasta	HEG1	chr3	124960710	125060997
HEG1_chr3_124960710_125060997	0/0	a0059	1380	1	1	0	0	0	0	copy fasta	HEG1	chr3	124960710	125060997
HELB_chr12_66297493_66343199	0/0	a0001	1087	101	19	17	50	2	13	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	a0002	1087	95	7	23	56	3	6	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/1	a0003	1087	51	2	11	29	1	7	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	1/0	a0004	1087	48	12	5	21	2	7	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	a0005	1087	20	9	3	6	0	2	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	a0006	1087	16	16	0	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	a0007	1087	8	7	0	1	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	a0008	1087	6	5	1	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	a0009	1087	5	1	2	2	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	a0010	1087	5	5	0	0	0	0	copy fasta	HELB	chr12	66297493	66343199