JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HELB_chr12_66297493_66343199	0/0	a0011	1087	5	5	0	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	a0012	1087	4	0	0	4	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	a0013	1087	4	4	0	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	a0014	1087	4	0	1	0	0	3	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	a0015	1087	3	0	3	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	a0016	1087	3	3	0	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	a0017	739	2	0	0	2	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	a0018	1087	1	1	0	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	a0019	830	1	1	0	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	a0020	1087	1	0	0	0	0	1	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	a0021	1087	1	0	0	1	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	a0022	1087	1	0	0	1	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	a0023	1087	1	1	0	0	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	a0024	1087	1	0	0	1	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	a0025	1087	1	0	0	0	0	1	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	a0026	1087	1	0	0	1	0	0	copy fasta	HELB	chr12	66297493	66343199
HELB_chr12_66297493_66343199	0/0	a0027	1087	1	0	0	1	0	0	copy fasta	HELB	chr12	66297493	66343199
HELLS_chr10_94540788_94607099	1/1	a0001	838	349	86	54	147	16	44	copy fasta	HELLS	chr10	94540788	94607099
HELLS_chr10_94540788_94607099	0/0	a0002	838	3	0	0	3	0	0	copy fasta	HELLS	chr10	94540788	94607099
HELLS_chr10_94540788_94607099	0/0	a0003	838	1	0	0	1	0	0	copy fasta	HELLS	chr10	94540788	94607099
HELLS_chr10_94540788_94607099	0/0	a0004	838	1	1	0	0	0	0	copy fasta	HELLS	chr10	94540788	94607099
HELLS_chr10_94540788_94607099	0/0	a0005	838	1	0	0	1	0	0	copy fasta	HELLS	chr10	94540788	94607099
HELLS_chr10_94540788_94607099	0/0	a0006	838	1	1	0	0	0	0	copy fasta	HELLS	chr10	94540788	94607099
HELLS_chr10_94540788_94607099	0/0	a0007	838	1	1	0	0	0	0	copy fasta	HELLS	chr10	94540788	94607099
HELLS_chr10_94540788_94607099	0/0	a0008	822	1	1	0	0	0	0	copy fasta	HELLS	chr10	94540788	94607099
HELQ_chr4_83402346_83460823	0/1	a0001	1101	148	21	29	74	4	19	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	a0002	1101	99	14	20	46	5	14	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	a0003	1101	29	28	1	0	0	0	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	a0004	1101	20	18	2	0	0	0	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	a0005	1101	4	4	0	0	0	0	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	a0006	1101	4	4	0	0	0	0	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	a0007	1101	3	3	0	0	0	0	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	a0008	1101	2	2	0	0	0	0	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	a0009	1101	1	0	1	0	0	0	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	a0010	1101	1	0	0	0	1	0	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	a0011	1101	1	0	0	0	0	1	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	a0012	1101	1	1	0	0	0	0	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	a0013	1101	1	1	0	0	0	0	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	1/0	a0014	1101	1	0	0	0	0	0	copy fasta	HELQ	chr4	83402346	83460823
HELQ_chr4_83402346_83460823	0/0	a0015	1101	1	0	1	0	0	0	copy fasta	HELQ	chr4	83402346	83460823
HELT_chr4_185013490_185025953	1/1	a0001	242	400	81	71	185	15	46	copy fasta	HELT	chr4	185013490	185025953
HELT_chr4_185013490_185025953	0/0	a0002	242	53	8	7	33	3	2	copy fasta	HELT	chr4	185013490	185025953
HELT_chr4_185013490_185025953	0/0	a0003	242	1	1	0	0	0	0	copy fasta	HELT	chr4	185013490	185025953
HELZ2_chr20_63553086_63579239	0/0	a0001	2649	74	5	23	28	3	15	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0002	2649	73	0	6	59	3	5	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/1	a0003	2649	49	4	14	15	4	11	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0004	2649	43	29	4	4	2	4	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0005	2649	9	0	0	9	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0006	2649	9	0	0	9	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0007	2649	8	2	5	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239