JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HELZ2_chr20_63553086_63579239	0/0	a0008	2649	5	0	4	0	1	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0009	2649	4	4	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0010	2649	4	4	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0011	2649	3	0	0	2	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0012	2649	3	0	1	1	1	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0013	2649	3	3	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0014	2649	3	0	0	3	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0015	2649	3	3	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0016	2649	3	3	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0017	2649	2	0	2	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0018	2649	2	0	0	2	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0019	2649	2	0	0	2	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0020	2649	2	0	0	2	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0021	2649	2	1	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0022	2649	2	0	0	2	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0023	2649	2	2	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0024	2649	2	0	0	2	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0025	2649	2	1	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0026	2649	2	0	2	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	1/0	a0027	2649	2	0	0	0	1	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0028	2649	2	0	2	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0029	2649	2	2	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0030	2649	2	2	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0031	2649	2	2	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0032	2649	2	0	0	0	0	2	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0033	2649	2	2	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0034	2649	1	0	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0035	2649	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0036	2649	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0037	2649	1	0	0	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0038	2649	1	0	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0039	2649	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0040	2649	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0041	2649	1	0	0	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0042	2649	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0043	2649	1	0	0	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0044	2649	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0045	2649	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0046	2649	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0047	2649	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0048	2649	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0049	2649	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0050	2649	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0051	2649	1	0	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0052	2649	1	0	0	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0053	2649	1	0	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0054	2649	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0055	2649	1	0	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0056	2649	1	0	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0057	2649	1	0	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239