JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HELZ2_chr20_63553086_63579239	0/0	a0058	2649	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0059	2649	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0060	2649	1	0	0	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0061	2649	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0062	2649	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0063	2649	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0064	2649	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0065	2649	1	0	0	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0066	2649	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0067	2649	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0068	2649	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0069	2649	1	0	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0070	2649	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0071	2649	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0072	2649	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0073	2649	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0074	2649	1	0	0	0	0	1	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0075	2649	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0076	2649	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0077	2649	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0078	2649	1	0	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0079	2649	1	0	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0080	2649	1	0	0	0	1	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0081	2649	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0082	2649	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0083	2649	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0084	2649	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0085	2649	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0086	2649	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0087	2649	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0088	2649	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0089	2649	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0090	2649	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0091	2649	1	1	0	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0092	2649	1	0	1	0	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ2_chr20_63553086_63579239	0/0	a0093	2649	1	0	0	1	0	0	copy fasta	HELZ2	chr20	63553086	63579239
HELZ_chr17_67065444_67250196	0/1	a0001	1942	188	57	40	57	5	28	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	a0002	1942	67	23	13	23	2	6	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	1/0	a0003	1942	7	0	5	0	1	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	a0004	1942	2	0	1	1	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	a0005	1942	2	0	0	0	0	2	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	a0006	1942	1	1	0	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	a0007	1942	1	0	0	1	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	a0008	1942	1	0	1	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	a0009	1942	1	0	0	1	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	a0010	1942	1	0	1	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	a0011	1942	1	1	0	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	a0012	1942	1	0	1	0	0	0	copy fasta	HELZ	chr17	67065444	67250196
HELZ_chr17_67065444_67250196	0/0	a0013	1942	1	0	0	1	0	0	copy fasta	HELZ	chr17	67065444	67250196
HEMGN_chr9_97921791_97943172	1/1	a0001	484	312	64	62	127	16	41	copy fasta	HEMGN	chr9	97921791	97943172