Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ALDH4A1_chr1_18866430_18907555	0/0	a0014	563	1	1	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	a0015	563	1	0	0	0	0	1	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	a0016	563	1	0	0	1	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH4A1_chr1_18866430_18907555	0/0	a0017	563	1	1	0	0	0	0	copy fasta	ALDH4A1	chr1	18866430	18907555
ALDH5A1_chr6_24489969_24542207	1/1	a0001	535	248	52	49	112	8	25	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	a0002	535	74	32	14	14	2	12	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	a0003	535	33	0	2	20	0	11	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	a0004	535	2	2	0	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	a0005	535	2	0	2	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	a0006	535	2	0	0	2	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	a0007	535	1	1	0	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	a0008	535	1	0	1	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	a0009	535	1	0	1	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	a0010	535	1	1	0	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	a0011	535	1	1	0	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	a0012	535	1	0	1	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH5A1_chr6_24489969_24542207	0/0	a0013	535	1	1	0	0	0	0	copy fasta	ALDH5A1	chr6	24489969	24542207
ALDH6A1_chr14_74051847_74089453	0/0	a0000	0	1	0	0	0	0	1	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	1/1	a0001	535	395	94	70	175	14	40	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	a0002	535	2	0	2	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	a0003	535	2	0	2	0	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	a0004	535	1	0	0	1	0	0	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH6A1_chr14_74051847_74089453	0/0	a0005	535	1	0	0	0	0	1	copy fasta	ALDH6A1	chr14	74051847	74089453
ALDH7A1_chr5_126536841_126600219	1/1	a0001	539	320	91	53	126	9	39	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	a0002	539	37	1	8	26	1	1	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	a0003	539	14	0	0	13	0	1	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	a0004	539	4	0	0	4	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	a0005	539	1	0	0	0	0	1	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	a0006	539	1	0	0	1	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	a0007	539	1	0	0	1	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	a0008	534	1	0	0	1	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH7A1_chr5_126536841_126600219	0/0	a0009	539	1	0	1	0	0	0	copy fasta	ALDH7A1	chr5	126536841	126600219
ALDH8A1_chr6_134912393_134955101	1/1	a0001	487	361	88	64	151	18	38	copy fasta	ALDH8A1	chr6	134912393	134955101
ALDH8A1_chr6_134912393_134955101	0/0	a0002	487	6	6	0	0	0	0	copy fasta	ALDH8A1	chr6	134912393	134955101
ALDH8A1_chr6_134912393_134955101	0/0	a0003	487	1	0	0	1	0	0	copy fasta	ALDH8A1	chr6	134912393	134955101
ALDH8A1_chr6_134912393_134955101	0/0	a0004	487	1	0	1	0	0	0	copy fasta	ALDH8A1	chr6	134912393	134955101
ALDH8A1_chr6_134912393_134955101	0/0	a0005	487	1	0	1	0	0	0	copy fasta	ALDH8A1	chr6	134912393	134955101
ALDH9A1_chr1_165657216_165703562	1/1	a0001	518	302	86	68	97	11	38	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	a0002	518	15	4	5	3	0	3	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	a0003	518	6	1	1	1	1	2	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	a0004	518	4	0	2	0	1	1	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	a0005	518	2	0	0	2	0	0	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	a0006	518	1	0	0	1	0	0	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	a0007	518	1	1	0	0	0	0	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDH9A1_chr1_165657216_165703562	0/0	a0008	494	1	0	0	0	1	0	copy fasta	ALDH9A1	chr1	165657216	165703562
ALDOA_chr16_30060760_30075414	1/1	a0001	418	364	85	61	162	14	40	copy fasta	ALDOA	chr16	30060760	30075414
ALDOA_chr16_30060760_30075414	0/0	a0002	418	1	0	0	0	0	1	copy fasta	ALDOA	chr16	30060760	30075414
ALDOA_chr16_30060760_30075414	0/0	a0003	418	1	0	0	1	0	0	copy fasta	ALDOA	chr16	30060760	30075414
ALDOA_chr16_30060760_30075414	0/0	a0004	418	1	0	0	0	0	1	copy fasta	ALDOA	chr16	30060760	30075414
ALDOA_chr16_30060760_30075414	0/0	a0005	418	1	0	0	1	0	0	copy fasta	ALDOA	chr16	30060760	30075414