JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HEMGN_chr9_97921791_97943172	0/0	a0002	484	1	0	0	1	0	0	copy fasta	HEMGN	chr9	97921791	97943172
HEMGN_chr9_97921791_97943172	0/0	a0003	484	1	0	0	0	0	1	copy fasta	HEMGN	chr9	97921791	97943172
HEMK1_chr3_50564522_50601166	1/1	a0001	338	300	60	51	147	10	30	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	a0002	338	13	13	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	a0003	338	3	2	1	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	a0004	338	2	0	2	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	a0005	338	1	1	0	0	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HEMK1_chr3_50564522_50601166	0/0	a0006	338	1	0	0	1	0	0	copy fasta	HEMK1	chr3	50564522	50601166
HENMT1_chr1_108643295_108666093	1/1	a0001	393	428	84	82	199	13	48	copy fasta	HENMT1	chr1	108643295	108666093
HENMT1_chr1_108643295_108666093	0/0	a0002	393	5	0	2	0	3	0	copy fasta	HENMT1	chr1	108643295	108666093
HENMT1_chr1_108643295_108666093	0/0	a0003	393	4	4	0	0	0	0	copy fasta	HENMT1	chr1	108643295	108666093
HENMT1_chr1_108643295_108666093	0/0	a0004	393	4	4	0	0	0	0	copy fasta	HENMT1	chr1	108643295	108666093
HENMT1_chr1_108643295_108666093	0/0	a0005	393	1	0	0	1	0	0	copy fasta	HENMT1	chr1	108643295	108666093
HEPACAM2_chr7_93183534_93231469	0/0	a0001	462	353	78	56	173	8	38	copy fasta	HEPACAM2	chr7	93183534	93231469
HEPACAM2_chr7_93183534_93231469	0/0	a0002	462	6	5	1	0	0	0	copy fasta	HEPACAM2	chr7	93183534	93231469
HEPACAM2_chr7_93183534_93231469	0/0	a0003	462	4	3	1	0	0	0	copy fasta	HEPACAM2	chr7	93183534	93231469
HEPACAM2_chr7_93183534_93231469	0/0	a0004	462	2	0	0	2	0	0	copy fasta	HEPACAM2	chr7	93183534	93231469
HEPACAM2_chr7_93183534_93231469	0/0	a0005	462	1	1	0	0	0	0	copy fasta	HEPACAM2	chr7	93183534	93231469
HEPACAM2_chr7_93183534_93231469	0/0	a0006	462	1	0	0	1	0	0	copy fasta	HEPACAM2	chr7	93183534	93231469
HEPACAM2_chr7_93183534_93231469	0/0	a0007	462	1	1	0	0	0	0	copy fasta	HEPACAM2	chr7	93183534	93231469
HEPACAM_chr11_124914205_124941047	0/0	a0001	416	317	65	52	153	14	33	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	1/1	a0002	416	50	8	20	4	2	14	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	a0003	416	35	10	1	21	0	3	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	a0004	416	14	0	0	14	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	a0005	416	2	1	1	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	a0006	416	1	1	0	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPACAM_chr11_124914205_124941047	0/0	a0007	416	1	1	0	0	0	0	copy fasta	HEPACAM	chr11	124914205	124941047
HEPHL1_chr11_94016354_94119208	0/1	a0001	1159	304	50	57	146	9	41	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	1/0	a0002	1159	20	19	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	a0003	1159	12	0	0	12	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	a0004	1159	8	8	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	a0005	1159	2	2	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	a0006	1159	2	0	0	2	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	a0007	1159	2	2	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	a0008	1159	2	0	0	2	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	a0009	1159	1	0	0	1	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	a0010	1159	1	1	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	a0011	1159	1	1	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	a0012	1159	1	0	0	0	0	1	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	a0013	1159	1	1	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	a0014	803	1	0	0	1	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	a0015	1159	1	0	0	1	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	a0016	1159	1	0	0	0	1	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	a0017	1159	1	1	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	a0018	1159	1	0	1	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	a0019	1159	1	0	0	0	0	1	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	a0020	1159	1	0	0	1	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	a0021	1159	1	0	0	0	0	1	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	a0022	1159	1	1	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPHL1_chr11_94016354_94119208	0/0	a0023	1159	1	1	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208