JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HEPHL1_chr11_94016354_94119208	0/0	a0024	1159	1	1	0	0	0	0	copy fasta	HEPHL1	chr11	94016354	94119208
HEPH_chrX_66159247_66272389	1/1	a0001	1158	204	62	45	69	8	18	copy fasta	HEPH	chrX	66159247	66272389
HEPH_chrX_66159247_66272389	0/0	a0002	1158	3	3	0	0	0	0	copy fasta	HEPH	chrX	66159247	66272389
HEPH_chrX_66159247_66272389	0/0	a0003	1158	2	0	0	2	0	0	copy fasta	HEPH	chrX	66159247	66272389
HEPH_chrX_66159247_66272389	0/0	a0004	1158	2	0	0	2	0	0	copy fasta	HEPH	chrX	66159247	66272389
HEPH_chrX_66159247_66272389	0/0	a0005	1158	2	0	0	2	0	0	copy fasta	HEPH	chrX	66159247	66272389
HEPH_chrX_66159247_66272389	0/0	a0006	1158	1	0	1	0	0	0	copy fasta	HEPH	chrX	66159247	66272389
HEPH_chrX_66159247_66272389	0/0	a0007	975	1	0	0	1	0	0	copy fasta	HEPH	chrX	66159247	66272389
HEPH_chrX_66159247_66272389	0/0	a0008	1158	1	0	0	1	0	0	copy fasta	HEPH	chrX	66159247	66272389
HEPH_chrX_66159247_66272389	0/0	a0009	1158	1	0	0	0	1	0	copy fasta	HEPH	chrX	66159247	66272389
HEPH_chrX_66159247_66272389	0/0	a0010	1158	1	1	0	0	0	0	copy fasta	HEPH	chrX	66159247	66272389
HEPN1_chr11_124914250_124925677	0/0	a0001	88	331	70	48	172	11	30	copy fasta	HEPN1	chr11	124914250	124925677
HEPN1_chr11_124914250_124925677	1/1	a0002	88	74	16	26	17	2	11	copy fasta	HEPN1	chr11	124914250	124925677
HEPN1_chr11_124914250_124925677	0/0	a0003	88	22	4	6	5	3	4	copy fasta	HEPN1	chr11	124914250	124925677
HEPN1_chr11_124914250_124925677	0/0	a0004	88	1	0	0	0	0	1	copy fasta	HEPN1	chr11	124914250	124925677
HERC1_chr15_63603618_63838948	0/0	a0001	4861	93	48	17	17	6	5	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	a0002	4861	46	18	18	0	5	5	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	1/0	a0003	4861	43	5	13	17	0	7	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	a0004	4861	11	11	0	0	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	a0005	4861	6	0	2	0	1	3	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/1	a0006	4861	2	0	1	0	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	a0007	4861	2	0	0	2	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	a0008	4861	1	1	0	0	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	a0009	4861	1	0	0	1	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	a0010	4861	1	1	0	0	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	a0011	4861	1	0	0	0	0	1	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	a0012	4861	1	0	1	0	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	a0013	4861	1	0	0	1	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	a0014	4861	1	0	0	0	0	1	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	a0015	4861	1	0	0	0	0	1	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	a0016	4861	1	0	1	0	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	a0017	4861	1	1	0	0	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	a0018	4861	1	1	0	0	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	a0019	4861	1	0	1	0	0	0	copy fasta	HERC1	chr15	63603618	63838948
HERC1_chr15_63603618_63838948	0/0	a0020	4861	1	0	0	0	0	1	copy fasta	HERC1	chr15	63603618	63838948
HERC2_chr15_28106040_28327179	1/1	a0001	4834	130	28	26	47	0	27	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	a0002	4834	45	4	10	29	0	2	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	a0003	4834	24	23	0	1	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	a0004	4834	15	13	2	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	a0005	4834	4	4	0	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	a0006	4834	2	1	1	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	a0007	4834	2	0	2	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	a0008	4834	2	2	0	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	a0009	4834	2	0	0	2	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	a0010	4834	1	1	0	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	a0011	4834	1	0	0	1	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	a0012	4834	1	0	0	1	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	a0013	4834	1	0	0	1	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	a0014	4834	1	0	0	0	0	1	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	a0015	4834	1	0	0	1	0	0	copy fasta	HERC2	chr15	28106040	28327179