JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HERC2_chr15_28106040_28327179	0/0	a0016	4834	1	0	1	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	a0017	4834	1	0	0	0	0	1	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	a0018	4834	1	0	0	1	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	a0019	4834	1	0	0	0	0	1	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	a0020	4834	1	0	0	0	0	1	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	a0021	4834	1	1	0	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	a0022	4834	1	0	0	1	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	a0023	4834	1	1	0	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	a0024	4834	1	0	0	1	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	a0025	4834	1	0	0	0	0	1	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	a0026	4834	1	0	0	1	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	a0027	4834	1	1	0	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	a0028	4834	1	1	0	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	a0029	4834	1	0	0	1	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	a0030	4834	1	1	0	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	a0031	4834	1	0	0	0	0	1	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	a0032	4834	1	0	0	0	0	1	copy fasta	HERC2	chr15	28106040	28327179
HERC2_chr15_28106040_28327179	0/0	a0033	4834	1	1	0	0	0	0	copy fasta	HERC2	chr15	28106040	28327179
HERC3_chr4_88587480_88713539	1/1	a0001	1050	223	72	42	89	3	15	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	a0002	1050	70	16	10	38	3	3	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	a0003	1050	1	0	0	1	0	0	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	a0004	1050	1	1	0	0	0	0	copy fasta	HERC3	chr4	88587480	88713539
HERC3_chr4_88587480_88713539	0/0	a0005	1050	1	1	0	0	0	0	copy fasta	HERC3	chr4	88587480	88713539
HERC4_chr10_67916905_68080283	1/1	a0001	1049	358	82	64	162	10	38	copy fasta	HERC4	chr10	67916905	68080283
HERC4_chr10_67916905_68080283	0/0	a0002	1049	1	0	0	1	0	0	copy fasta	HERC4	chr10	67916905	68080283
HERC4_chr10_67916905_68080283	0/0	a0003	1049	1	0	0	1	0	0	copy fasta	HERC4	chr10	67916905	68080283
HERC5_chr4_88452119_88511163	0/1	a0001	1024	211	69	34	87	5	15	copy fasta	HERC5	chr4	88452119	88511163
HERC5_chr4_88452119_88511163	1/0	a0002	1024	96	13	21	43	5	13	copy fasta	HERC5	chr4	88452119	88511163
HERC5_chr4_88452119_88511163	0/0	a0003	1024	13	0	6	7	0	0	copy fasta	HERC5	chr4	88452119	88511163
HERC5_chr4_88452119_88511163	0/0	a0004	1024	6	5	1	0	0	0	copy fasta	HERC5	chr4	88452119	88511163
HERC5_chr4_88452119_88511163	0/0	a0005	1024	1	0	0	1	0	0	copy fasta	HERC5	chr4	88452119	88511163
HERC5_chr4_88452119_88511163	0/0	a0006	1024	1	0	0	1	0	0	copy fasta	HERC5	chr4	88452119	88511163
HERC5_chr4_88452119_88511163	0/0	a0007	1024	1	1	0	0	0	0	copy fasta	HERC5	chr4	88452119	88511163
HERC5_chr4_88452119_88511163	0/0	a0008	1024	1	0	0	1	0	0	copy fasta	HERC5	chr4	88452119	88511163
HERC6_chr4_88373852_88448097	0/0	a0001	1022	72	21	11	24	1	15	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	1/1	a0002	1022	59	7	10	19	8	13	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	a0003	1022	9	0	2	7	0	0	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	a0004	1022	7	4	0	2	0	1	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	a0005	1022	5	4	1	0	0	0	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	a0006	1022	5	5	0	0	0	0	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	a0007	1022	3	0	0	0	1	2	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	a0008	1020	3	3	0	0	0	0	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	a0009	1022	3	3	0	0	0	0	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	a0010	1022	2	2	0	0	0	0	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	a0011	1022	2	0	1	0	0	1	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	a0012	1022	2	2	0	0	0	0	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	a0013	1022	1	1	0	0	0	0	copy fasta	HERC6	chr4	88373852	88448097
HERC6_chr4_88373852_88448097	0/0	a0014	1022	1	0	1	0	0	0	copy fasta	HERC6	chr4	88373852	88448097
HERPUD1_chr16_56927142_56949864	1/1	a0001	391	368	80	59	181	14	32	copy fasta	HERPUD1	chr16	56927142	56949864
HERPUD1_chr16_56927142_56949864	0/0	a0002	391	56	14	12	16	2	12	copy fasta	HERPUD1	chr16	56927142	56949864