JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HFE_chr6_26082429_26103343	0/0	a0003	348	4	0	1	0	2	1	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	a0004	348	2	0	2	0	0	0	copy fasta	HFE	chr6	26082429	26103343
HFE_chr6_26082429_26103343	0/0	a0005	348	1	1	0	0	0	0	copy fasta	HFE	chr6	26082429	26103343
HFM1_chr1_91255766_91409837	0/0	a0001	1435	316	61	53	155	8	39	copy fasta	HFM1	chr1	91255766	91409837
HFM1_chr1_91255766_91409837	0/1	a0002	1435	31	15	9	0	4	2	copy fasta	HFM1	chr1	91255766	91409837
HFM1_chr1_91255766_91409837	0/0	a0003	1435	4	3	0	0	0	1	copy fasta	HFM1	chr1	91255766	91409837
HFM1_chr1_91255766_91409837	0/0	a0004	1435	3	0	0	3	0	0	copy fasta	HFM1	chr1	91255766	91409837
HFM1_chr1_91255766_91409837	0/0	a0005	1435	3	3	0	0	0	0	copy fasta	HFM1	chr1	91255766	91409837
HFM1_chr1_91255766_91409837	0/0	a0006	1435	2	2	0	0	0	0	copy fasta	HFM1	chr1	91255766	91409837
HFM1_chr1_91255766_91409837	1/0	a0007	1435	1	0	0	0	0	0	copy fasta	HFM1	chr1	91255766	91409837
HFM1_chr1_91255766_91409837	0/0	a0008	1435	1	1	0	0	0	0	copy fasta	HFM1	chr1	91255766	91409837
HFM1_chr1_91255766_91409837	0/0	a0009	1435	1	1	0	0	0	0	copy fasta	HFM1	chr1	91255766	91409837
HGD_chr3_120623172_120687239	0/1	a0001	445	249	67	61	83	12	25	copy fasta	HGD	chr3	120623172	120687239
HGD_chr3_120623172_120687239	1/0	a0002	445	115	15	12	64	4	19	copy fasta	HGD	chr3	120623172	120687239
HGD_chr3_120623172_120687239	0/0	a0003	445	5	4	1	0	0	0	copy fasta	HGD	chr3	120623172	120687239
HGD_chr3_120623172_120687239	0/0	a0004	445	2	2	0	0	0	0	copy fasta	HGD	chr3	120623172	120687239
HGD_chr3_120623172_120687239	0/0	a0005	445	1	1	0	0	0	0	copy fasta	HGD	chr3	120623172	120687239
HGD_chr3_120623172_120687239	0/0	a0006	445	1	1	0	0	0	0	copy fasta	HGD	chr3	120623172	120687239
HGD_chr3_120623172_120687239	0/0	a0007	445	1	0	0	1	0	0	copy fasta	HGD	chr3	120623172	120687239
HGFAC_chr4_3436968_3454486	0/1	a0001	655	211	48	45	91	10	16	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	a0002	655	76	3	7	59	1	6	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	1/0	a0003	655	64	24	15	8	3	13	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	a0004	655	52	2	4	33	2	11	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	a0005	655	14	3	4	6	0	1	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	a0006	655	8	8	0	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	a0007	655	3	0	3	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	a0008	655	2	2	0	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	a0009	655	2	0	1	0	1	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	a0010	655	2	0	2	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	a0011	655	2	0	1	0	0	1	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	a0012	655	2	2	0	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	a0013	655	1	0	0	1	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	a0014	655	1	0	1	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	a0015	655	1	1	0	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	a0016	655	1	0	0	0	0	1	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	a0017	655	1	0	0	0	0	1	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	a0018	655	1	0	0	0	1	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	a0019	655	1	1	0	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	a0020	655	1	1	0	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	a0021	655	1	0	1	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	a0022	655	1	0	0	1	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	a0023	655	1	0	0	1	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	a0024	655	1	0	0	1	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	a0025	655	1	1	0	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	a0026	655	1	0	1	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	a0027	254	1	0	1	0	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGFAC_chr4_3436968_3454486	0/0	a0028	663	1	0	0	1	0	0	copy fasta	HGFAC	chr4	3436968	3454486
HGF_chr7_81694010_81775047	1/1	a0001	728	267	83	46	100	4	32	copy fasta	HGF	chr7	81694010	81775047
HGF_chr7_81694010_81775047	0/0	a0002	728	3	0	2	0	0	1	copy fasta	HGF	chr7	81694010	81775047
HGF_chr7_81694010_81775047	0/0	a0003	728	1	0	0	0	0	1	copy fasta	HGF	chr7	81694010	81775047