JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HGF_chr7_81694010_81775047	0/0	a0004	728	1	1	0	0	0	0	copy fasta	HGF	chr7	81694010	81775047
HGH1_chr8_144132774_144145851	1/1	a0001	390	292	86	54	113	5	32	copy fasta	HGH1	chr8	144132774	144145851
HGH1_chr8_144132774_144145851	0/0	a0002	390	37	1	3	25	0	8	copy fasta	HGH1	chr8	144132774	144145851
HGH1_chr8_144132774_144145851	0/0	a0003	390	5	0	3	0	1	1	copy fasta	HGH1	chr8	144132774	144145851
HGH1_chr8_144132774_144145851	0/0	a0004	390	2	0	0	2	0	0	copy fasta	HGH1	chr8	144132774	144145851
HGH1_chr8_144132774_144145851	0/0	a0005	178	1	0	0	1	0	0	copy fasta	HGH1	chr8	144132774	144145851
HGH1_chr8_144132774_144145851	0/0	a0006	390	1	0	0	1	0	0	copy fasta	HGH1	chr8	144132774	144145851
HGH1_chr8_144132774_144145851	0/0	a0007	390	1	1	0	0	0	0	copy fasta	HGH1	chr8	144132774	144145851
HGH1_chr8_144132774_144145851	0/0	a0008	390	1	0	0	1	0	0	copy fasta	HGH1	chr8	144132774	144145851
HGH1_chr8_144132774_144145851	0/0	a0009	390	1	0	0	1	0	0	copy fasta	HGH1	chr8	144132774	144145851
HGH1_chr8_144132774_144145851	0/0	a0010	390	1	0	0	0	0	1	copy fasta	HGH1	chr8	144132774	144145851
HGSNAT_chr8_43135464_43207855	1/1	a0001	635	201	51	59	66	2	21	copy fasta	HGSNAT	chr8	43135464	43207855
HGSNAT_chr8_43135464_43207855	0/0	a0002	635	23	22	1	0	0	0	copy fasta	HGSNAT	chr8	43135464	43207855
HGSNAT_chr8_43135464_43207855	0/0	a0003	635	7	6	1	0	0	0	copy fasta	HGSNAT	chr8	43135464	43207855
HGSNAT_chr8_43135464_43207855	0/0	a0004	635	1	1	0	0	0	0	copy fasta	HGSNAT	chr8	43135464	43207855
HGSNAT_chr8_43135464_43207855	0/0	a0005	635	1	0	1	0	0	0	copy fasta	HGSNAT	chr8	43135464	43207855
HGSNAT_chr8_43135464_43207855	0/0	a0006	635	1	0	0	0	0	1	copy fasta	HGSNAT	chr8	43135464	43207855
HGS_chr17_81679011_81707121	1/1	a0001	777	333	82	69	126	14	40	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	a0002	777	63	1	4	53	2	3	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	a0003	777	3	3	0	0	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	a0004	777	3	0	3	0	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	a0005	777	2	0	0	0	0	2	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	a0006	777	2	2	0	0	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	a0007	777	1	1	0	0	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	a0008	777	1	0	1	0	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	a0009	777	1	0	0	1	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	a0010	777	1	1	0	0	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	a0011	777	1	0	0	1	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	a0012	777	1	0	1	0	0	0	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	a0013	777	1	0	0	0	0	1	copy fasta	HGS	chr17	81679011	81707121
HGS_chr17_81679011_81707121	0/0	a0014	405	1	0	0	1	0	0	copy fasta	HGS	chr17	81679011	81707121
HHATL_chr3_42687663_42707798	0/0	a0001	504	269	60	54	113	10	32	copy fasta	HHATL	chr3	42687663	42707798
HHATL_chr3_42687663_42707798	1/0	a0002	504	129	29	27	55	3	14	copy fasta	HHATL	chr3	42687663	42707798
HHATL_chr3_42687663_42707798	0/0	a0003	504	3	3	0	0	0	0	copy fasta	HHATL	chr3	42687663	42707798
HHATL_chr3_42687663_42707798	0/0	a0004	504	2	0	2	0	0	0	copy fasta	HHATL	chr3	42687663	42707798
HHATL_chr3_42687663_42707798	0/0	a0005	504	2	0	2	0	0	0	copy fasta	HHATL	chr3	42687663	42707798
HHATL_chr3_42687663_42707798	0/0	a0006	504	1	0	0	1	0	0	copy fasta	HHATL	chr3	42687663	42707798
HHATL_chr3_42687663_42707798	0/0	a0007	504	1	1	0	0	0	0	copy fasta	HHATL	chr3	42687663	42707798
HHATL_chr3_42687663_42707798	0/0	a0008	504	1	0	1	0	0	0	copy fasta	HHATL	chr3	42687663	42707798
HHATL_chr3_42687663_42707798	0/1	a0009	504	1	0	0	0	0	0	copy fasta	HHATL	chr3	42687663	42707798
HHATL_chr3_42687663_42707798	0/0	a0010	504	1	0	0	1	0	0	copy fasta	HHATL	chr3	42687663	42707798
HHATL_chr3_42687663_42707798	0/0	a0011	504	1	1	0	0	0	0	copy fasta	HHATL	chr3	42687663	42707798
HHATL_chr3_42687663_42707798	0/0	a0012	504	1	0	0	0	1	0	copy fasta	HHATL	chr3	42687663	42707798
HHAT_chr1_210323902_210681290	1/1	a0001	493	214	77	38	72	6	19	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	a0002	493	36	0	10	19	4	3	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	a0003	493	11	2	5	0	0	4	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	a0004	493	3	3	0	0	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	a0005	493	1	0	0	1	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	a0006	493	1	1	0	0	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHAT_chr1_210323902_210681290	0/0	a0007	493	1	0	1	0	0	0	copy fasta	HHAT	chr1	210323902	210681290