JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HHAT_chr1_210323902_210681290	0/0	a0008	493	1	1	0	0	0	0	copy fasta	HHAT	chr1	210323902	210681290
HHEX_chr10_92684955_92700647	1/1	a0001	270	373	94	78	139	16	44	copy fasta	HHEX	chr10	92684955	92700647
HHEX_chr10_92684955_92700647	0/0	a0002	270	1	0	0	1	0	0	copy fasta	HHEX	chr10	92684955	92700647
HHIPL1_chr14_99640129_99685569	0/0	a0000	0	1	1	0	0	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	a0001	782	207	37	43	94	7	26	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	1/1	a0002	782	160	54	31	49	9	15	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	a0003	782	1	0	0	1	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	a0004	782	1	0	0	1	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	a0005	782	1	0	0	0	0	1	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	a0006	782	1	1	0	0	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	a0007	782	1	0	0	1	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL1_chr14_99640129_99685569	0/0	a0008	782	1	1	0	0	0	0	copy fasta	HHIPL1	chr14	99640129	99685569
HHIPL2_chr1_222517264_222553104	1/0	a0001	724	155	29	21	77	8	19	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	a0002	724	112	33	24	39	2	14	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	a0003	724	84	0	17	63	0	4	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/1	a0004	724	40	18	6	13	1	1	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	a0005	724	15	14	1	0	0	0	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	a0006	724	3	0	0	3	0	0	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	a0007	724	1	0	1	0	0	0	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	a0008	724	1	0	0	0	1	0	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	a0009	724	1	0	1	0	0	0	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	a0010	724	1	0	1	0	0	0	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	a0011	724	1	0	0	1	0	0	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	a0012	724	1	1	0	0	0	0	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	a0013	724	1	0	1	0	0	0	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	a0014	724	1	1	0	0	0	0	copy fasta	HHIPL2	chr1	222517264	222553104
HHIPL2_chr1_222517264_222553104	0/0	a0015	724	1	0	1	0	0	0	copy fasta	HHIPL2	chr1	222517264	222553104
HHIP_chr4_144641156_144750271	1/1	a0001	700	305	74	45	148	10	26	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	a0002	700	8	7	1	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	a0003	700	2	0	0	2	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHIP_chr4_144641156_144750271	0/0	a0004	700	1	1	0	0	0	0	copy fasta	HHIP	chr4	144641156	144750271
HHLA1_chr8_132056480_132116157	0/1	a0001	531	191	51	36	75	5	23	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	1/0	a0002	531	85	12	10	49	4	9	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	a0003	531	61	13	23	17	2	6	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	a0004	531	21	7	8	2	1	3	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	a0005	531	7	7	0	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	a0006	531	5	0	0	5	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	a0007	531	3	3	0	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	a0008	531	2	2	0	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	a0009	531	1	1	0	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	a0010	531	1	0	0	0	0	1	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	a0011	531	1	0	0	0	0	1	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	a0012	531	1	0	1	0	0	0	copy fasta	HHLA1	chr8	132056480	132116157
HHLA1_chr8_132056480_132116157	0/0	a0013	531	1	0	0	0	0	1	copy fasta	HHLA1	chr8	132056480	132116157
HHLA2_chr3_108291548_108383285	1/0	a0001	414	147	7	16	105	1	17	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/1	a0002	414	89	37	27	7	6	11	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	a0003	414	42	10	5	27	0	0	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	a0004	414	30	7	10	0	5	8	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	a0005	414	5	5	0	0	0	0	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	a0006	414	4	3	1	0	0	0	copy fasta	HHLA2	chr3	108291548	108383285