JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HHLA2_chr3_108291548_108383285	0/0	a0007	289	2	0	0	0	0	2	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	a0008	414	1	0	0	1	0	0	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	a0009	414	1	0	1	0	0	0	copy fasta	HHLA2	chr3	108291548	108383285
HHLA2_chr3_108291548_108383285	0/0	a0010	414	1	1	0	0	0	0	copy fasta	HHLA2	chr3	108291548	108383285
HIBADH_chr7_27520442_27667883	1/1	a0001	336	326	84	68	120	14	38	copy fasta	HIBADH	chr7	27520442	27667883
HIBCH_chr2_190198920_190324826	1/0	a0001	386	149	32	18	83	3	12	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/0	a0002	386	109	19	14	70	1	5	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/1	a0003	381	101	22	26	29	8	15	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/0	a0004	381	3	3	0	0	0	0	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/0	a0005	386	2	2	0	0	0	0	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/0	a0006	386	2	2	0	0	0	0	copy fasta	HIBCH	chr2	190198920	190324826
HIBCH_chr2_190198920_190324826	0/0	a0007	386	2	0	0	0	2	0	copy fasta	HIBCH	chr2	190198920	190324826
HIC1_chr17_2050103_2068241	1/1	a0001	714	391	92	72	168	13	44	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	a0002	714	15	0	0	9	1	5	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	a0003	714	2	1	1	0	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	a0004	714	1	0	0	1	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	a0005	714	1	0	0	0	0	1	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	a0006	714	1	0	1	0	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	a0007	714	1	0	1	0	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	a0008	260	1	0	1	0	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC1_chr17_2050103_2068241	0/0	a0009	710	1	1	0	0	0	0	copy fasta	HIC1	chr17	2050103	2068241
HIC2_chr22_21412371_21456463	1/0	a0001	615	278	74	53	106	8	36	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/1	a0002	615	5	2	1	1	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	a0003	615	2	0	0	0	0	2	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	a0004	615	1	1	0	0	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	a0005	615	1	0	0	1	0	0	copy fasta	HIC2	chr22	21412371	21456463
HIC2_chr22_21412371_21456463	0/0	a0006	615	1	1	0	0	0	0	copy fasta	HIC2	chr22	21412371	21456463
HID1_chr17_74945742_74977759	1/1	a0001	788	350	89	74	129	16	40	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	a0002	788	6	5	1	0	0	0	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	a0003	788	3	3	0	0	0	0	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	a0004	788	2	0	0	0	0	2	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	a0005	788	1	0	0	1	0	0	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	a0006	788	1	0	1	0	0	0	copy fasta	HID1	chr17	74945742	74977759
HID1_chr17_74945742_74977759	0/0	a0007	788	1	1	0	0	0	0	copy fasta	HID1	chr17	74945742	74977759
HIF1AN_chr10_100530943_100564998	1/1	a0001	349	270	83	47	103	10	25	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	a0002	349	49	2	9	27	2	9	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1AN_chr10_100530943_100564998	0/0	a0003	349	1	1	0	0	0	0	copy fasta	HIF1AN	chr10	100530943	100564998
HIF1A_chr14_61690513_61753258	1/1	a0001	826	284	69	38	144	10	21	copy fasta	HIF1A	chr14	61690513	61753258
HIF1A_chr14_61690513_61753258	0/0	a0002	826	25	3	9	9	1	3	copy fasta	HIF1A	chr14	61690513	61753258
HIF1A_chr14_61690513_61753258	0/0	a0003	826	5	0	0	5	0	0	copy fasta	HIF1A	chr14	61690513	61753258
HIF1A_chr14_61690513_61753258	0/0	a0004	826	3	2	0	0	1	0	copy fasta	HIF1A	chr14	61690513	61753258
HIF1A_chr14_61690513_61753258	0/0	a0005	826	1	0	1	0	0	0	copy fasta	HIF1A	chr14	61690513	61753258
HIF1A_chr14_61690513_61753258	0/0	a0006	826	1	1	0	0	0	0	copy fasta	HIF1A	chr14	61690513	61753258
HIF1A_chr14_61690513_61753258	0/0	a0007	826	1	0	0	1	0	0	copy fasta	HIF1A	chr14	61690513	61753258
HIF1A_chr14_61690513_61753258	0/0	a0008	826	1	0	0	1	0	0	copy fasta	HIF1A	chr14	61690513	61753258
HIF1A_chr14_61690513_61753258	0/0	a0009	826	1	1	0	0	0	0	copy fasta	HIF1A	chr14	61690513	61753258
HIF3A_chr19_46292042_46348433	1/1	a0001	669	242	58	50	91	13	28	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	a0002	669	137	5	18	95	3	16	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	a0003	669	20	13	3	3	0	1	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	a0004	669	5	4	1	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433