JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HIF3A_chr19_46292042_46348433	0/0	a0005	669	2	0	0	0	0	2	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	a0006	669	2	2	0	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	a0007	669	2	2	0	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	a0008	669	2	0	0	2	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	a0009	669	1	0	0	1	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	a0010	669	1	0	0	0	0	1	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	a0011	669	1	0	0	1	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	a0012	669	1	1	0	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	a0013	669	1	1	0	0	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIF3A_chr19_46292042_46348433	0/0	a0014	669	1	0	0	1	0	0	copy fasta	HIF3A	chr19	46292042	46348433
HIGD1A_chr3_42777908_42809490	1/1	a0001	93	399	90	80	166	12	49	copy fasta	HIGD1A	chr3	42777908	42809490
HIGD1A_chr3_42777908_42809490	0/0	a0002	93	1	0	0	0	0	1	copy fasta	HIGD1A	chr3	42777908	42809490
HIGD1B_chr17_44842883_44855476	1/0	a0001	99	352	78	60	165	13	35	copy fasta	HIGD1B	chr17	44842883	44855476
HIGD1B_chr17_44842883_44855476	0/1	a0002	99	60	13	21	17	2	6	copy fasta	HIGD1B	chr17	44842883	44855476
HIGD1B_chr17_44842883_44855476	0/0	a0003	99	2	0	1	0	1	0	copy fasta	HIGD1B	chr17	44842883	44855476
HIGD1B_chr17_44842883_44855476	0/0	a0004	99	1	0	0	0	0	1	copy fasta	HIGD1B	chr17	44842883	44855476
HIGD1B_chr17_44842883_44855476	0/0	a0005	99	1	1	0	0	0	0	copy fasta	HIGD1B	chr17	44842883	44855476
HIGD1C_chr12_50947544_50975607	1/1	a0001	97	375	75	72	172	14	40	copy fasta	HIGD1C	chr12	50947544	50975607
HIGD1C_chr12_50947544_50975607	0/0	a0002	97	2	2	0	0	0	0	copy fasta	HIGD1C	chr12	50947544	50975607
HIGD1C_chr12_50947544_50975607	0/0	a0003	97	2	0	0	2	0	0	copy fasta	HIGD1C	chr12	50947544	50975607
HIGD1C_chr12_50947544_50975607	0/0	a0004	97	1	1	0	0	0	0	copy fasta	HIGD1C	chr12	50947544	50975607
HIGD2A_chr5_176383751_176394761	1/1	a0001	106	440	94	76	206	18	44	copy fasta	HIGD2A	chr5	176383751	176394761
HIGD2A_chr5_176383751_176394761	0/0	a0002	106	1	0	0	1	0	0	copy fasta	HIGD2A	chr5	176383751	176394761
HIGD2A_chr5_176383751_176394761	0/0	a0003	106	1	0	0	1	0	0	copy fasta	HIGD2A	chr5	176383751	176394761
HIGD2B_chr15_72670798_72691182	1/1	a0001	106	398	73	78	185	16	44	copy fasta	HIGD2B	chr15	72670798	72691182
HIGD2B_chr15_72670798_72691182	0/0	a0002	106	36	21	0	15	0	0	copy fasta	HIGD2B	chr15	72670798	72691182
HIGD2B_chr15_72670798_72691182	0/0	a0003	106	2	2	0	0	0	0	copy fasta	HIGD2B	chr15	72670798	72691182
HIKESHI_chr11_86297240_86350943	1/1	a0001	197	398	84	64	184	14	50	copy fasta	HIKESHI	chr11	86297240	86350943
HILPDA_chr7_128450878_128463418	1/1	a0001	63	423	91	76	194	16	44	copy fasta	HILPDA	chr7	128450878	128463418
HILPDA_chr7_128450878_128463418	0/0	a0002	63	1	1	0	0	0	0	copy fasta	HILPDA	chr7	128450878	128463418
HINFP_chr11_119116580_119141059	1/1	a0001	517	216	74	33	70	11	26	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	a0002	517	176	15	19	121	3	18	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	a0003	517	4	4	0	0	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	a0004	517	3	1	2	0	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	a0005	517	1	0	0	1	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	a0006	517	1	1	0	0	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	a0007	517	1	0	1	0	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	a0008	517	1	0	1	0	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINFP_chr11_119116580_119141059	0/0	a0009	517	1	1	0	0	0	0	copy fasta	HINFP	chr11	119116580	119141059
HINT1_chr5_131154027_131170256	1/1	a0001	126	424	90	78	198	14	42	copy fasta	HINT1	chr5	131154027	131170256
HINT2_chr9_35807960_35820042	1/1	a0001	163	418	88	74	202	12	40	copy fasta	HINT2	chr9	35807960	35820042
HINT2_chr9_35807960_35820042	0/0	a0002	163	2	0	2	0	0	0	copy fasta	HINT2	chr9	35807960	35820042
HINT3_chr6_125951770_125985244	0/1	a0001	182	166	58	27	57	9	14	copy fasta	HINT3	chr6	125951770	125985244
HINT3_chr6_125951770_125985244	1/0	a0002	182	101	33	29	11	9	18	copy fasta	HINT3	chr6	125951770	125985244
HINT3_chr6_125951770_125985244	0/0	a0003	182	1	1	0	0	0	0	copy fasta	HINT3	chr6	125951770	125985244
HIP1R_chr12_122830457_122867961	1/1	a0001	1068	219	36	66	76	11	28	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	a0002	1068	68	18	4	32	1	13	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	a0003	1068	15	14	1	0	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	a0004	1068	11	0	0	11	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	a0005	1068	6	6	0	0	0	0	copy fasta	HIP1R	chr12	122830457	122867961