Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ALDOA_chr16_30060760_30075414	0/0	a0006	418	1	1	0	0	0	0	copy fasta	ALDOA	chr16	30060760	30075414
ALDOA_chr16_30060760_30075414	0/0	a0007	418	1	0	1	0	0	0	copy fasta	ALDOA	chr16	30060760	30075414
ALDOB_chr9_101415560_101440774	1/1	a0001	364	401	94	74	170	16	45	copy fasta	ALDOB	chr9	101415560	101440774
ALDOB_chr9_101415560_101440774	0/0	a0002	364	14	0	0	13	0	1	copy fasta	ALDOB	chr9	101415560	101440774
ALDOB_chr9_101415560_101440774	0/0	a0003	364	1	0	1	0	0	0	copy fasta	ALDOB	chr9	101415560	101440774
ALDOB_chr9_101415560_101440774	0/0	a0004	364	1	0	1	0	0	0	copy fasta	ALDOB	chr9	101415560	101440774
ALDOB_chr9_101415560_101440774	0/0	a0005	364	1	0	0	1	0	0	copy fasta	ALDOB	chr9	101415560	101440774
ALDOC_chr17_28568120_28581895	1/1	a0001	364	346	83	63	152	8	38	copy fasta	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	a0002	364	3	0	0	3	0	0	copy fasta	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	a0003	1	1	0	0	1	0	0	copy fasta	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	a0004	364	1	0	1	0	0	0	copy fasta	ALDOC	chr17	28568120	28581895
ALDOC_chr17_28568120_28581895	0/0	a0005	364	1	1	0	0	0	0	copy fasta	ALDOC	chr17	28568120	28581895
ALG10B_chr12_38311774_38334721	0/1	a0001	473	403	74	78	198	15	37	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	1/0	a0002	473	15	13	1	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	a0003	473	7	1	1	0	0	5	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	a0004	473	6	0	0	6	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	a0005	473	5	5	0	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	a0006	473	5	0	4	0	1	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	a0007	473	4	4	0	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	a0008	473	2	0	0	2	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	a0009	473	2	0	0	2	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	a0010	473	1	0	0	1	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	a0011	473	1	1	0	0	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10B_chr12_38311774_38334721	0/0	a0012	473	1	0	0	1	0	0	copy fasta	ALG10B	chr12	38311774	38334721
ALG10_chr12_34017496_34033302	1/1	a0001	473	328	93	71	116	12	34	copy fasta	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	a0002	473	2	2	0	0	0	0	copy fasta	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	a0003	473	1	0	1	0	0	0	copy fasta	ALG10	chr12	34017496	34033302
ALG10_chr12_34017496_34033302	0/0	a0004	473	1	1	0	0	0	0	copy fasta	ALG10	chr12	34017496	34033302
ALG11_chr13_52007398_52038600	1/1	a0001	492	352	75	62	162	13	38	copy fasta	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	a0002	492	8	0	8	0	0	0	copy fasta	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	a0003	492	1	1	0	0	0	0	copy fasta	ALG11	chr13	52007398	52038600
ALG11_chr13_52007398_52038600	0/0	a0004	492	1	0	0	0	1	0	copy fasta	ALG11	chr13	52007398	52038600
ALG12_chr22_49895229_49923438	1/1	a0001	488	299	80	55	119	12	31	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	a0002	488	31	2	5	16	0	8	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	a0003	488	12	0	0	7	0	5	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	a0004	488	2	2	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	a0005	488	1	1	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	a0006	488	1	1	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	a0007	488	1	1	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG12_chr22_49895229_49923438	0/0	a0008	488	1	1	0	0	0	0	copy fasta	ALG12	chr22	49895229	49923438
ALG13_chrX_111676170_111765649	1/1	a0001	1137	160	61	21	58	5	13	copy fasta	ALG13	chrX	111676170	111765649
ALG13_chrX_111676170_111765649	0/0	a0002	1138	16	6	1	7	0	2	copy fasta	ALG13	chrX	111676170	111765649
ALG13_chrX_111676170_111765649	0/0	a0003	1136	5	4	0	1	0	0	copy fasta	ALG13	chrX	111676170	111765649
ALG13_chrX_111676170_111765649	0/0	a0004	1139	3	3	0	0	0	0	copy fasta	ALG13	chrX	111676170	111765649
ALG13_chrX_111676170_111765649	0/0	a0005	1135	1	0	0	0	0	1	copy fasta	ALG13	chrX	111676170	111765649
ALG13_chrX_111676170_111765649	0/0	a0006	1137	1	0	0	1	0	0	copy fasta	ALG13	chrX	111676170	111765649
ALG13_chrX_111676170_111765649	0/0	a0007	947	1	0	0	1	0	0	copy fasta	ALG13	chrX	111676170	111765649
ALG13_chrX_111676170_111765649	0/0	a0008	1137	1	0	1	0	0	0	copy fasta	ALG13	chrX	111676170	111765649
ALG13_chrX_111676170_111765649	0/0	a0009	1137	1	0	0	1	0	0	copy fasta	ALG13	chrX	111676170	111765649
ALG13_chrX_111676170_111765649	0/0	a0010	1137	1	0	0	1	0	0	copy fasta	ALG13	chrX	111676170	111765649