JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HIP1R_chr12_122830457_122867961	0/0	a0006	1068	5	0	0	5	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	a0007	1068	4	0	1	0	3	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	a0008	1068	2	0	1	0	0	1	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	a0009	1068	2	2	0	0	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	a0010	1068	1	1	0	0	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	a0011	1068	1	0	0	1	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	a0012	1063	1	0	0	1	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	a0013	1068	1	0	0	1	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	a0014	1068	1	0	1	0	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	a0015	1068	1	0	0	0	0	1	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	a0016	1068	1	1	0	0	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	a0017	1068	1	0	0	1	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	a0018	1068	1	1	0	0	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	a0019	1068	1	1	0	0	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	a0020	1068	1	0	0	0	0	1	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	a0021	1068	1	0	0	0	1	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	a0022	1068	1	0	1	0	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	a0023	1068	1	0	1	0	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	a0024	1068	1	0	0	1	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1R_chr12_122830457_122867961	0/0	a0025	1068	1	0	0	1	0	0	copy fasta	HIP1R	chr12	122830457	122867961
HIP1_chr7_75528298_75743941	1/1	a0001	1037	237	79	51	57	16	32	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	a0002	1037	6	0	0	6	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	a0003	1037	3	2	1	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	a0004	1037	2	2	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	a0005	1037	1	1	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	a0006	1037	1	0	0	1	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	a0007	1037	1	1	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	a0008	1037	1	1	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	a0009	1037	1	1	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIP1_chr7_75528298_75743941	0/0	a0010	1037	1	1	0	0	0	0	copy fasta	HIP1	chr7	75528298	75743941
HIPK1_chr1_113924324_113982869	1/1	a0001	1210	377	86	68	163	14	44	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	a0002	1210	1	0	0	1	0	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	a0003	1210	1	1	0	0	0	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	a0004	1210	1	0	0	1	0	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	a0005	1210	1	0	0	1	0	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK1_chr1_113924324_113982869	0/0	a0006	1210	1	1	0	0	0	0	copy fasta	HIPK1	chr1	113924324	113982869
HIPK2_chr7_139556570_139782998	1/1	a0001	1198	152	78	32	20	8	12	copy fasta	HIPK2	chr7	139556570	139782998
HIPK2_chr7_139556570_139782998	0/0	a0002	1198	2	2	0	0	0	0	copy fasta	HIPK2	chr7	139556570	139782998
HIPK3_chr11_33252381_33362023	1/1	a0001	1215	331	74	59	154	16	26	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	a0002	1215	6	5	1	0	0	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	a0003	1215	2	2	0	0	0	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	a0004	1215	1	1	0	0	0	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	a0005	1215	1	1	0	0	0	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK3_chr11_33252381_33362023	0/0	a0006	1215	1	1	0	0	0	0	copy fasta	HIPK3	chr11	33252381	33362023
HIPK4_chr19_40374271_40395181	1/1	a0001	616	299	88	54	104	16	35	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	a0002	616	51	0	8	37	2	4	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	a0003	616	7	0	7	0	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	a0004	616	4	4	0	0	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	a0005	616	3	0	0	3	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	a0006	616	3	0	0	3	0	0	copy fasta	HIPK4	chr19	40374271	40395181