JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HIPK4_chr19_40374271_40395181	0/0	a0007	616	3	3	0	0	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	a0008	616	2	2	0	0	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	a0009	616	2	0	0	2	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	a0010	616	1	0	0	1	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	a0011	616	1	0	0	1	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	a0012	616	1	1	0	0	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	a0013	616	1	0	0	1	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	a0014	616	1	0	1	0	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	a0015	616	1	0	0	0	0	1	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	a0016	616	1	1	0	0	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIPK4_chr19_40374271_40395181	0/0	a0017	616	1	1	0	0	0	0	copy fasta	HIPK4	chr19	40374271	40395181
HIRA_chr22_19325698_19436733	1/1	a0001	1017	357	80	66	173	8	28	copy fasta	HIRA	chr22	19325698	19436733
HIRA_chr22_19325698_19436733	0/0	a0002	1017	2	0	2	0	0	0	copy fasta	HIRA	chr22	19325698	19436733
HIRA_chr22_19325698_19436733	0/0	a0003	1017	1	0	0	1	0	0	copy fasta	HIRA	chr22	19325698	19436733
HIRA_chr22_19325698_19436733	0/0	a0004	1017	1	0	0	1	0	0	copy fasta	HIRA	chr22	19325698	19436733
HIRA_chr22_19325698_19436733	0/0	a0005	1017	1	0	0	1	0	0	copy fasta	HIRA	chr22	19325698	19436733
HIRA_chr22_19325698_19436733	0/0	a0006	1017	1	0	0	1	0	0	copy fasta	HIRA	chr22	19325698	19436733
HIRA_chr22_19325698_19436733	0/0	a0007	1017	1	0	0	1	0	0	copy fasta	HIRA	chr22	19325698	19436733
HIRIP3_chr16_29987330_30000617	1/1	a0001	556	331	75	58	146	14	36	copy fasta	HIRIP3	chr16	29987330	30000617
HIRIP3_chr16_29987330_30000617	0/0	a0002	556	8	7	1	0	0	0	copy fasta	HIRIP3	chr16	29987330	30000617
HIRIP3_chr16_29987330_30000617	0/0	a0003	556	3	3	0	0	0	0	copy fasta	HIRIP3	chr16	29987330	30000617
HIRIP3_chr16_29987330_30000617	0/0	a0004	556	2	0	0	2	0	0	copy fasta	HIRIP3	chr16	29987330	30000617
HIRIP3_chr16_29987330_30000617	0/0	a0005	556	1	0	0	1	0	0	copy fasta	HIRIP3	chr16	29987330	30000617
HIRIP3_chr16_29987330_30000617	0/0	a0006	556	1	0	1	0	0	0	copy fasta	HIRIP3	chr16	29987330	30000617
HIRIP3_chr16_29987330_30000617	0/0	a0007	556	1	0	0	1	0	0	copy fasta	HIRIP3	chr16	29987330	30000617
HIRIP3_chr16_29987330_30000617	0/0	a0008	556	1	0	0	1	0	0	copy fasta	HIRIP3	chr16	29987330	30000617
HIRIP3_chr16_29987330_30000617	0/0	a0009	556	1	1	0	0	0	0	copy fasta	HIRIP3	chr16	29987330	30000617
HIRIP3_chr16_29987330_30000617	0/0	a0010	556	1	0	0	1	0	0	copy fasta	HIRIP3	chr16	29987330	30000617
HIVEP1_chr6_12007312_12169999	1/1	a0001	2718	108	35	21	42	2	6	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0002	2718	78	12	22	34	4	6	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0003	2718	68	3	14	35	1	15	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0004	2718	35	6	1	16	4	8	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0005	2718	8	1	3	3	0	1	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0006	2718	5	5	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0007	2718	3	2	1	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0008	2718	2	0	0	0	0	2	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0009	2718	2	2	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0010	2718	2	2	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0011	2718	2	1	1	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0012	2718	2	0	2	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0013	2718	2	2	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0014	2718	2	2	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0015	2718	1	1	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0016	2718	1	0	0	1	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0017	2718	1	0	0	1	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0018	2718	1	0	0	1	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0019	2718	1	0	0	0	1	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0020	2718	1	0	0	1	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0021	2718	1	1	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0022	2718	1	0	0	1	0	0	copy fasta	HIVEP1	chr6	12007312	12169999