JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HIVEP1_chr6_12007312_12169999	0/0	a0023	2718	1	1	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0024	2718	1	1	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0025	2718	1	1	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0026	2718	1	0	0	1	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0027	2718	1	0	0	1	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0028	2718	1	1	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0029	2718	1	1	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0030	2718	1	1	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0031	2718	1	1	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0032	2718	1	1	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0033	2718	1	0	0	1	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0034	2718	1	0	0	1	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0035	2718	1	0	0	1	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0036	2718	1	0	1	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0037	2718	1	1	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0038	2718	1	1	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP1_chr6_12007312_12169999	0/0	a0039	2718	1	1	0	0	0	0	copy fasta	HIVEP1	chr6	12007312	12169999
HIVEP2_chr6_142746469_142950176	0/1	a0001	2446	266	75	61	88	10	31	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	a0002	2446	5	0	0	5	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	1/0	a0003	2446	4	0	1	0	0	2	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	a0004	2446	3	0	2	0	1	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	a0005	2446	2	0	0	0	0	2	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	a0006	2446	1	0	0	0	1	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	a0007	2446	1	0	1	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	a0008	2446	1	1	0	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	a0009	2446	1	0	0	1	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	a0010	2446	1	0	0	0	0	1	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	a0011	2446	1	0	1	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	a0012	2446	1	1	0	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP2_chr6_142746469_142950176	0/0	a0013	2446	1	1	0	0	0	0	copy fasta	HIVEP2	chr6	142746469	142950176
HIVEP3_chr1_41501365_41923922	0/0	a0001	2406	52	11	16	17	4	4	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	a0002	2406	22	5	4	10	0	3	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	a0003	2406	6	5	0	1	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	a0004	2406	6	4	2	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	a0005	2406	5	0	1	2	0	2	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	a0006	2406	4	3	1	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	a0007	2406	3	0	3	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	a0008	2406	3	3	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	a0009	2406	3	3	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	a0010	2406	2	2	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	a0011	2406	2	2	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	a0012	2406	2	2	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	a0013	2406	2	2	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	a0014	2406	2	2	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	a0015	2406	2	2	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	a0016	2406	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	a0017	2406	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	a0018	2406	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	a0019	2406	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	a0020	2406	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922