JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HIVEP3_chr1_41501365_41923922	0/0	a0021	2406	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	a0022	2406	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	a0023	2406	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	a0024	2406	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	a0025	2406	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	a0026	2406	1	0	1	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	a0027	2406	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	a0028	2406	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	a0029	2406	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	a0030	2406	1	0	0	1	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	a0031	2406	1	0	0	0	0	1	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	a0032	2406	1	0	0	1	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HIVEP3_chr1_41501365_41923922	0/0	a0033	2406	1	1	0	0	0	0	copy fasta	HIVEP3	chr1	41501365	41923922
HJURP_chr2_233831702_233859535	0/1	a0001	748	93	4	23	44	7	14	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	1/0	a0002	748	83	11	21	32	4	14	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	a0003	748	79	41	6	21	0	11	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	a0004	748	65	17	4	42	0	2	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	a0005	748	27	0	8	16	1	2	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	a0006	748	25	6	0	19	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	a0007	748	22	0	3	14	3	2	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	a0008	748	19	1	0	18	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	a0009	748	6	6	0	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	a0010	748	4	1	1	1	0	1	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	a0011	748	3	0	2	0	1	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	a0012	748	3	0	0	3	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	a0013	748	3	3	0	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	a0014	748	2	2	0	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	a0015	748	2	2	0	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	a0016	748	1	0	0	1	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	a0017	748	1	0	0	1	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	a0018	748	1	0	0	1	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	a0019	748	1	1	0	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	a0020	748	1	0	0	1	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	a0021	748	1	0	1	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	a0022	748	1	0	0	1	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	a0023	748	1	0	0	0	0	1	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	a0024	748	1	0	0	1	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	a0025	748	1	0	0	1	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	a0026	748	1	1	0	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	a0027	748	1	0	1	0	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	a0028	748	1	0	0	1	0	0	copy fasta	HJURP	chr2	233831702	233859535
HJURP_chr2_233831702_233859535	0/0	a0029	748	1	0	0	0	0	1	copy fasta	HJURP	chr2	233831702	233859535
HJV_chr1_146012470_146026735	1/1	a0001	426	368	70	70	174	12	40	copy fasta	HJV	chr1	146012470	146026735
HJV_chr1_146012470_146026735	0/0	a0002	426	6	6	0	0	0	0	copy fasta	HJV	chr1	146012470	146026735
HJV_chr1_146012470_146026735	0/0	a0003	426	2	0	0	2	0	0	copy fasta	HJV	chr1	146012470	146026735
HJV_chr1_146012470_146026735	0/0	a0004	426	1	1	0	0	0	0	copy fasta	HJV	chr1	146012470	146026735
HJV_chr1_146012470_146026735	0/0	a0005	426	1	0	1	0	0	0	copy fasta	HJV	chr1	146012470	146026735
HJV_chr1_146012470_146026735	0/0	a0006	426	1	1	0	0	0	0	copy fasta	HJV	chr1	146012470	146026735
HJV_chr1_146012470_146026735	0/0	a0007	426	1	0	0	1	0	0	copy fasta	HJV	chr1	146012470	146026735
HJV_chr1_146012470_146026735	0/0	a0008	426	1	0	0	1	0	0	copy fasta	HJV	chr1	146012470	146026735