JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HJV_chr1_146012470_146026735	0/0	a0009	426	1	0	1	0	0	0	copy fasta	HJV	chr1	146012470	146026735
HK1_chr10_69273496_69406882	1/1	a0001	921	278	81	54	102	10	29	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	a0002	921	1	1	0	0	0	0	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69273496_69406882	0/0	a0003	921	1	0	0	0	0	1	copy fasta	HK1	chr10	69273496	69406882
HK1_chr10_69313847_69406882	1/1	a0001	917	295	86	60	96	14	37	copy fasta	HK1	chr10	69313847	69406882
HK1_chr10_69313847_69406882	0/0	a0002	917	1	0	0	0	0	1	copy fasta	HK1	chr10	69313847	69406882
HK2_chr2_74829127_74898359	1/0	a0001	917	241	33	47	113	15	32	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	a0002	917	67	38	4	23	0	2	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/1	a0003	917	61	4	13	33	3	7	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	a0004	917	14	12	2	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	a0005	917	1	0	0	1	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	a0006	917	1	0	0	0	0	1	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	a0007	917	1	0	1	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	a0008	917	1	1	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	a0009	917	1	1	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	a0010	917	1	0	1	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	a0011	917	1	1	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	a0012	917	1	1	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	a0013	917	1	1	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	a0014	917	1	1	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK2_chr2_74829127_74898359	0/0	a0015	917	1	1	0	0	0	0	copy fasta	HK2	chr2	74829127	74898359
HK3_chr5_176875869_176904346	1/1	a0001	923	358	75	70	168	9	34	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	a0002	923	9	9	0	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	a0003	923	9	0	1	8	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	a0004	923	2	0	0	0	2	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	a0005	923	2	2	0	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	a0006	923	2	0	1	0	0	1	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	a0007	923	2	2	0	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	a0008	923	2	0	0	0	2	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	a0009	923	2	2	0	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	a0010	923	2	2	0	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	a0011	923	1	1	0	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	a0012	923	1	0	1	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	a0013	923	1	1	0	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	a0014	512	1	0	0	1	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	a0015	923	1	0	0	1	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	a0016	923	1	1	0	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	a0017	923	1	0	0	0	0	1	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	a0018	923	1	0	0	0	0	1	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	a0019	923	1	0	0	0	1	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	a0020	923	1	0	0	1	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	a0021	923	1	0	0	0	1	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	a0022	923	1	0	0	0	0	1	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	a0023	923	1	0	0	0	0	1	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	a0024	923	1	0	0	1	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	a0025	923	1	1	0	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	a0026	923	1	0	0	0	1	0	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	a0027	923	1	0	0	0	0	1	copy fasta	HK3	chr5	176875869	176904346
HK3_chr5_176875869_176904346	0/0	a0028	923	1	0	1	0	0	0	copy fasta	HK3	chr5	176875869	176904346
HKDC1_chr10_69215332_69272552	0/0	a0001	917	115	37	10	51	7	10	copy fasta	HKDC1	chr10	69215332	69272552