JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
HKDC1_chr10_69215332_69272552	0/0	a0002	917	87	32	26	12	7	10	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	a0003	917	83	6	6	61	1	9	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/1	a0004	917	62	9	17	27	1	7	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	a0005	917	7	0	0	7	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	a0006	917	5	1	0	0	0	4	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	a0007	917	3	3	0	0	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	a0008	917	3	0	0	3	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	a0009	917	3	3	0	0	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	a0010	917	2	2	0	0	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	1/0	a0011	917	2	1	0	0	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	a0012	917	2	0	2	0	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	a0013	917	1	0	0	0	0	1	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	a0014	917	1	0	0	0	0	1	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	a0015	917	1	0	0	1	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	a0016	917	1	0	1	0	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	a0017	917	1	1	0	0	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HKDC1_chr10_69215332_69272552	0/0	a0018	917	1	1	0	0	0	0	copy fasta	HKDC1	chr10	69215332	69272552
HLA-A_chr6_29937532_29950870	0/0	a0001	365	49	0	6	36	4	3	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0002	365	45	11	19	14	1	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0003	365	34	9	0	21	0	4	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0004	365	33	0	3	22	0	8	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0005	365	25	3	2	16	0	4	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	1/0	a0006	365	22	5	12	2	1	1	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/1	a0007	365	21	4	4	5	1	6	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0008	365	21	0	0	21	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0009	365	19	2	0	11	3	3	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0010	365	15	1	5	0	1	8	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0011	365	14	8	5	0	1	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0012	365	13	11	0	1	0	1	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0013	365	13	0	0	13	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0014	365	8	7	1	0	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0015	365	8	7	0	0	0	1	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0016	365	7	0	5	0	2	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0017	365	7	0	5	0	0	2	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0018	365	6	4	2	0	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0019	365	5	1	0	0	0	4	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0020	365	5	0	0	5	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0021	365	5	4	1	0	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0022	365	4	3	1	0	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0023	365	4	0	0	4	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0024	365	4	2	2	0	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0025	365	3	0	0	3	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0026	365	3	3	0	0	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0027	365	2	0	0	2	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0028	365	2	2	0	0	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0029	365	2	0	0	2	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0030	365	2	0	2	0	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0031	365	2	0	2	0	0	0	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0032	365	2	0	0	1	0	1	copy fasta	HLA-A	chr6	29937532	29950870
HLA-A_chr6_29937532_29950870	0/0	a0033	365	2	0	2	0	0	0	copy fasta	HLA-A	chr6	29937532	29950870